Variant report

Variant	rs409262
Chromosome Location	chr20:52855343-52855344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52854512..52856527-chr20:52861978..52864576,3	MCF-7	breast:
2	chr20:52853983..52856679-chr20:52866149..52869118,2	MCF-7	breast:
3	chr20:52853706..52856539-chr20:52873064..52874754,2	MCF-7	breast:
4	chr20:52843581..52850062-chr20:52850195..52855343,9	MCF-7	breast:
5	chr20:52855219..52857176-chr20:52882201..52884210,2	MCF-7	breast:
6	chr20:52855018..52855707-chr9:90632070..90632689,2	MCF-7	breast:
7	chr20:52852456..52856671-chr20:52869199..52873917,7	MCF-7	breast:
8	chr20:52851637..52853511-chr20:52855095..52857097,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1477737	1.00[AMR][1000 genomes]
rs1812479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2169617	1.00[AMR][1000 genomes]
rs2426508	1.00[AMR][1000 genomes]
rs292115	1.00[AMR][1000 genomes]
rs292121	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292127	1.00[AMR][1000 genomes]
rs292130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292131	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292147	1.00[AMR][1000 genomes]
rs406902	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6097908	1.00[AMR][1000 genomes]
rs73912631	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52855000-52856000	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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