Variant report

Variant	rs2430019
Chromosome Location	chr7:122276156-122276157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1120019	0.92[AFR][1000 genomes]
rs2098215	0.85[AFR][1000 genomes]
rs2159829	0.85[AFR][1000 genomes]
rs2192023	1.00[AFR][1000 genomes]
rs2471201	1.00[AFR][1000 genomes]
rs28397617	0.91[AFR][1000 genomes]
rs28415980	0.84[AFR][1000 genomes]
rs55933077	0.83[AFR][1000 genomes]
rs56185713	0.91[AFR][1000 genomes]
rs57121578	0.84[AFR][1000 genomes]
rs58174606	0.91[AFR][1000 genomes]
rs58478325	0.91[AFR][1000 genomes]
rs59855207	0.91[AFR][1000 genomes]
rs60560320	0.91[AFR][1000 genomes]
rs73717680	0.91[AFR][1000 genomes]
rs73717681	0.91[AFR][1000 genomes]
rs73717682	0.91[AFR][1000 genomes]
rs73717683	0.91[AFR][1000 genomes]
rs73717684	0.83[AFR][1000 genomes]
rs73717685	0.91[AFR][1000 genomes]
rs73717687	0.83[AFR][1000 genomes]
rs73717688	0.91[AFR][1000 genomes]
rs73717689	0.91[AFR][1000 genomes]
rs73717695	0.91[AFR][1000 genomes]
rs73717700	0.83[AFR][1000 genomes]
rs73717701	0.91[AFR][1000 genomes]
rs73719703	0.83[AFR][1000 genomes]
rs73719707	0.91[AFR][1000 genomes]
rs73719709	0.83[AFR][1000 genomes]
rs73719713	0.91[AFR][1000 genomes]
rs73719714	0.83[AFR][1000 genomes]
rs73719716	0.91[AFR][1000 genomes]
rs73719717	0.84[AFR][1000 genomes]
rs73719719	0.84[AFR][1000 genomes]
rs73719721	0.91[AFR][1000 genomes]
rs9918712	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122269800-122288000	Weak transcription	HepG2	liver
2	chr7:122276000-122276400	ZNF genes & repeats	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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