Variant report
| Variant | rs73719707 |
|---|---|
| Chromosome Location | chr7:122226258-122226259 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | EBF1 | chr7:122226181-122226446 | GM12878 | blood: | n/a | chr7:122226302-122226313 |
| 2 | E2F4 | chr7:122226190-122226390 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:122225953..122228862-chr7:122376425..122378624,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CADPS2 | TF binding region |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs1120019 | 0.84[AFR][1000 genomes] |
| rs2192023 | 0.91[AFR][1000 genomes] |
| rs2430019 | 0.91[AFR][1000 genomes] |
| rs2471201 | 0.91[AFR][1000 genomes] |
| rs28397617 | 1.00[AFR][1000 genomes] |
| rs28415980 | 0.91[AFR][1000 genomes] |
| rs55933077 | 0.91[AFR][1000 genomes] |
| rs56185713 | 1.00[AFR][1000 genomes] |
| rs57121578 | 0.91[AFR][1000 genomes] |
| rs58174606 | 1.00[AFR][1000 genomes] |
| rs58478325 | 1.00[AFR][1000 genomes] |
| rs59855207 | 1.00[AFR][1000 genomes] |
| rs60560320 | 1.00[AFR][1000 genomes] |
| rs73717680 | 1.00[AFR][1000 genomes] |
| rs73717681 | 1.00[AFR][1000 genomes] |
| rs73717682 | 1.00[AFR][1000 genomes] |
| rs73717683 | 1.00[AFR][1000 genomes] |
| rs73717684 | 0.91[AFR][1000 genomes] |
| rs73717685 | 1.00[AFR][1000 genomes] |
| rs73717687 | 0.91[AFR][1000 genomes] |
| rs73717688 | 1.00[AFR][1000 genomes] |
| rs73717689 | 1.00[AFR][1000 genomes] |
| rs73717695 | 1.00[AFR][1000 genomes] |
| rs73717698 | 0.84[AFR][1000 genomes] |
| rs73717700 | 0.91[AFR][1000 genomes] |
| rs73717701 | 1.00[AFR][1000 genomes] |
| rs73719703 | 0.91[AFR][1000 genomes] |
| rs73719709 | 0.91[AFR][1000 genomes] |
| rs73719713 | 1.00[AFR][1000 genomes] |
| rs73719714 | 0.91[AFR][1000 genomes] |
| rs73719716 | 1.00[AFR][1000 genomes] |
| rs73719717 | 0.91[AFR][1000 genomes] |
| rs73719719 | 0.91[AFR][1000 genomes] |
| rs73719721 | 1.00[AFR][1000 genomes] |
| rs9918712 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017029 | chr7:121958574-122338623 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv532178 | chr7:122203056-122978846 | Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:122198000-122229000 | Weak transcription | Fetal Lung | lung |
| 2 | chr7:122215000-122228800 | Weak transcription | Adipose Nuclei | Adipose |
| 3 | chr7:122217600-122265600 | Weak transcription | Aorta | Aorta |
