Variant report

Variant	rs28397617
Chromosome Location	chr7:122228250-122228251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1120019	0.84[AFR][1000 genomes]
rs2192023	0.91[AFR][1000 genomes]
rs2430019	0.91[AFR][1000 genomes]
rs2471201	0.91[AFR][1000 genomes]
rs28415980	0.91[AFR][1000 genomes]
rs55933077	0.91[AFR][1000 genomes]
rs56185713	1.00[AFR][1000 genomes]
rs57121578	0.91[AFR][1000 genomes]
rs58174606	1.00[AFR][1000 genomes]
rs58478325	1.00[AFR][1000 genomes]
rs59855207	1.00[AFR][1000 genomes]
rs60560320	1.00[AFR][1000 genomes]
rs73717680	1.00[AFR][1000 genomes]
rs73717681	1.00[AFR][1000 genomes]
rs73717682	1.00[AFR][1000 genomes]
rs73717683	1.00[AFR][1000 genomes]
rs73717684	0.91[AFR][1000 genomes]
rs73717685	1.00[AFR][1000 genomes]
rs73717687	0.91[AFR][1000 genomes]
rs73717688	1.00[AFR][1000 genomes]
rs73717689	1.00[AFR][1000 genomes]
rs73717695	1.00[AFR][1000 genomes]
rs73717698	0.84[AFR][1000 genomes]
rs73717700	0.91[AFR][1000 genomes]
rs73717701	1.00[AFR][1000 genomes]
rs73719703	0.91[AFR][1000 genomes]
rs73719707	1.00[AFR][1000 genomes]
rs73719709	0.91[AFR][1000 genomes]
rs73719713	1.00[AFR][1000 genomes]
rs73719714	0.91[AFR][1000 genomes]
rs73719716	1.00[AFR][1000 genomes]
rs73719717	0.91[AFR][1000 genomes]
rs73719719	0.91[AFR][1000 genomes]
rs73719721	1.00[AFR][1000 genomes]
rs9918712	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122198000-122229000	Weak transcription	Fetal Lung	lung
2	chr7:122215000-122228800	Weak transcription	Adipose Nuclei	Adipose
3	chr7:122217600-122265600	Weak transcription	Aorta	Aorta
4	chr7:122228200-122229400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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