Variant report

Variant	rs28415980
Chromosome Location	chr7:122228859-122228860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs2192023	0.84[AFR][1000 genomes]
rs2430019	0.84[AFR][1000 genomes]
rs2471201	0.84[AFR][1000 genomes]
rs28397617	0.91[AFR][1000 genomes]
rs55933077	0.83[AFR][1000 genomes]
rs56185713	0.91[AFR][1000 genomes]
rs57121578	0.84[AFR][1000 genomes]
rs58174606	0.91[AFR][1000 genomes]
rs58478325	0.91[AFR][1000 genomes]
rs59855207	0.91[AFR][1000 genomes]
rs60560320	0.91[AFR][1000 genomes]
rs73717680	0.91[AFR][1000 genomes]
rs73717681	0.91[AFR][1000 genomes]
rs73717682	0.91[AFR][1000 genomes]
rs73717683	0.91[AFR][1000 genomes]
rs73717684	0.83[AFR][1000 genomes]
rs73717685	0.91[AFR][1000 genomes]
rs73717687	0.83[AFR][1000 genomes]
rs73717688	0.91[AFR][1000 genomes]
rs73717689	0.91[AFR][1000 genomes]
rs73717695	0.91[AFR][1000 genomes]
rs73717700	0.83[AFR][1000 genomes]
rs73717701	0.91[AFR][1000 genomes]
rs73719703	0.83[AFR][1000 genomes]
rs73719707	0.91[AFR][1000 genomes]
rs73719709	0.83[AFR][1000 genomes]
rs73719713	0.91[AFR][1000 genomes]
rs73719714	0.83[AFR][1000 genomes]
rs73719716	0.91[AFR][1000 genomes]
rs73719717	0.84[AFR][1000 genomes]
rs73719719	1.00[AFR][1000 genomes]
rs73719721	0.91[AFR][1000 genomes]
rs9918712	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122198000-122229000	Weak transcription	Fetal Lung	lung
2	chr7:122217600-122265600	Weak transcription	Aorta	Aorta
3	chr7:122228200-122229400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:122228400-122229200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:122228600-122229200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:122228600-122229200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:122228800-122229200	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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