Variant report
| Variant | rs2460696 |
|---|---|
| Chromosome Location | chr6:71632028-71632029 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12212650 | 0.82[EUR][1000 genomes] |
| rs1304029 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs1535288 | 0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1574490 | 0.91[ASN][1000 genomes] |
| rs2255286 | 0.88[CEU][hapmap];0.89[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs2347629 | 0.84[CEU][hapmap] |
| rs2460691 | 0.84[GIH][hapmap] |
| rs2474918 | 0.84[GIH][hapmap] |
| rs2504739 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4707868 | 0.80[EUR][1000 genomes] |
| rs4707869 | 0.84[CEU][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap] |
| rs62420337 | 0.91[ASN][1000 genomes] |
| rs6922893 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap] |
| rs7749568 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs9294882 | 0.84[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap] |
| rs9446313 | 0.83[ASN][1000 genomes] |
| rs9455273 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs9455274 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs9455275 | 0.91[ASN][1000 genomes] |
| rs9455277 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932111 | chr6:70736835-71633094 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv886148 | chr6:71623253-71694742 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
