Variant report

Variant	rs4707869
Chromosome Location	chr6:71651385-71651386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10945275	0.89[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs12212650	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1304029	0.84[CEU][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap]
rs1320315	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs1535288	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1574490	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2255286	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2347629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap]
rs2460691	0.89[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2460696	0.84[CEU][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap]
rs2474918	0.89[CHB][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2504735	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2504739	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4707868	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4707871	0.94[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs582908	0.89[CHB][hapmap]
rs62420337	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6900011	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs6914786	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7449748	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs9294882	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs9446311	0.84[CEU][hapmap]
rs9446313	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9455273	0.96[CEU][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9455274	0.92[CEU][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9455275	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9455277	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886148	chr6:71623253-71694742	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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