Variant report

Variant	rs4707871
Chromosome Location	chr6:71662709-71662710
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71594143..71594787-chr6:71662346..71663077,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10945275	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12212650	0.88[ASN][1000 genomes]
rs1320315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255286	0.94[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs2347629	0.94[CHB][hapmap]
rs2460691	0.84[CHB][hapmap]
rs2474918	0.84[CHB][hapmap]
rs2504735	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs4400179	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4707868	0.94[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs4707869	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs473861	0.91[CEU][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs582908	0.95[CEU][hapmap];0.94[CHB][hapmap]
rs6900011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910674	0.91[AMR][1000 genomes]
rs6914786	1.00[ASN][1000 genomes]
rs6922893	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6933662	0.86[AMR][1000 genomes]
rs7449748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7749568	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7758130	0.86[AMR][1000 genomes]
rs9294882	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs9342802	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9354957	0.93[AMR][1000 genomes]
rs9364120	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886148	chr6:71623253-71694742	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71662000-71662800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:71662200-71662800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr6:71662200-71663400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:71662400-71662800	Flanking Active TSS	Fetal Brain Female	brain

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