Variant report

Variant	rs9342802
Chromosome Location	chr6:71716172-71716173
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10945275	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1320315	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4400179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4707871	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs473861	0.91[AMR][1000 genomes]
rs6900011	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6910674	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6933662	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7749568	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7758130	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9346416	0.82[AMR][1000 genomes]
rs9354957	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9364120	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966627	chr6:71699692-71726851	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71695600-71716600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:71715400-71716800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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