Variant report

Variant	rs7749568
Chromosome Location	chr6:71662286-71662287
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71660383..71662410-chr6:71669635..71671756,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10945275	1.00[CEU][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1304029	0.91[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs1320315	0.81[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1535288	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs1574490	1.00[ASN][1000 genomes]
rs2460696	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs2504735	0.90[ASW][hapmap];0.95[CEU][hapmap];0.89[GIH][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs2504739	0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs4400179	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4707871	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs473861	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs582908	0.95[CEU][hapmap]
rs62420337	1.00[ASN][1000 genomes]
rs6900011	0.81[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6910674	0.91[AMR][1000 genomes]
rs6922893	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs6933662	0.86[AMR][1000 genomes]
rs7449748	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7758130	0.86[AMR][1000 genomes]
rs9342802	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9354957	0.93[AMR][1000 genomes]
rs9364120	0.86[AMR][1000 genomes]
rs9446313	0.92[ASN][1000 genomes]
rs9455273	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9455274	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9455275	1.00[ASN][1000 genomes]
rs9455277	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886148	chr6:71623253-71694742	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71661800-71662400	Enhancers	Fetal Brain Female	brain
2	chr6:71662000-71662800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:71662200-71662600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr6:71662200-71662600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:71662200-71662600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:71662200-71662800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr6:71662200-71663400	Enhancers	Cortex derived primary cultured neurospheres	brain

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