Variant report

Variant	rs10945275
Chromosome Location	chr6:71667847-71667848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12212650	0.83[ASN][1000 genomes]
rs13197338	1.00[YRI][hapmap]
rs1320315	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2255286	0.89[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs2347629	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs2460691	0.81[CHD][hapmap]
rs2504735	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap]
rs3734371	1.00[YRI][hapmap]
rs3734372	1.00[YRI][hapmap]
rs4400179	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4707868	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs4707869	0.89[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs4707871	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs473861	0.91[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs582908	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs639448	1.00[YRI][hapmap]
rs6900011	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6910674	0.98[AMR][1000 genomes]
rs6914786	0.95[ASN][1000 genomes]
rs6922893	1.00[CEU][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs6933662	0.93[AMR][1000 genomes]
rs7449748	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7749568	1.00[CEU][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7758130	0.93[AMR][1000 genomes]
rs9294882	0.89[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap]
rs9342802	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9346416	0.82[AMR][1000 genomes]
rs9354957	1.00[AMR][1000 genomes]
rs9364120	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886148	chr6:71623253-71694742	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71666800-71668000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:71667400-71668000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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