Variant report
| Variant | rs582908 |
|---|---|
| Chromosome Location | chr6:71611889-71611890 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:71610333..71612285-chr6:71613695..71615747,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10945275 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12212650 | 0.81[ASN][1000 genomes] |
| rs13197338 | 1.00[YRI][hapmap] |
| rs1320315 | 0.95[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2255286 | 0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2347629 | 0.89[CHB][hapmap] |
| rs2504735 | 0.95[CEU][hapmap];0.94[CHB][hapmap] |
| rs3734371 | 1.00[YRI][hapmap] |
| rs3734372 | 1.00[YRI][hapmap] |
| rs4400179 | 0.85[AMR][1000 genomes] |
| rs4707868 | 0.89[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs4707869 | 0.89[CHB][hapmap] |
| rs4707871 | 0.95[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs473861 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs639448 | 1.00[YRI][hapmap] |
| rs6900011 | 0.95[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6910674 | 0.83[AMR][1000 genomes] |
| rs6922893 | 0.95[CEU][hapmap] |
| rs7449748 | 0.95[CEU][hapmap];0.94[CHB][hapmap] |
| rs7749568 | 0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs9294882 | 0.89[CHB][hapmap] |
| rs9342802 | 0.85[AMR][1000 genomes] |
| rs9354957 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932111 | chr6:70736835-71633094 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv603639 | chr6:71595151-71623253 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
