Variant report

Variant	rs9354957
Chromosome Location	chr6:71722091-71722092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10945275	0.91[CEU][hapmap];1.00[AMR][1000 genomes]
rs1320315	0.91[CEU][hapmap];0.91[AMR][1000 genomes]
rs2504735	0.86[CEU][hapmap]
rs4349772	0.84[EUR][1000 genomes]
rs4400179	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4707871	0.90[CEU][hapmap];0.93[AMR][1000 genomes]
rs473861	0.81[CEU][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes]
rs582908	0.85[CEU][hapmap]
rs6900011	0.91[CEU][hapmap];0.95[AMR][1000 genomes]
rs6910674	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6922893	0.91[CEU][hapmap]
rs6933662	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7449748	0.91[CEU][hapmap]
rs7749568	0.90[CEU][hapmap];0.93[AMR][1000 genomes]
rs7758130	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9342802	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9346416	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9364120	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966627	chr6:71699692-71726851	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71721200-71722400	Enhancers	Fetal Brain Male	brain
2	chr6:71721200-71722600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:71721200-71723200	Enhancers	Brain Germinal Matrix	brain
4	chr6:71721400-71722400	Enhancers	Fetal Brain Female	brain
5	chr6:71721400-71722600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:71721400-71722600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:71721400-71722600	Enhancers	Fetal Muscle Leg	muscle
8	chr6:71721400-71723000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:71721400-71723000	Enhancers	Fetal Lung	lung
10	chr6:71721600-71722200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:71721600-71722400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:71721600-71722600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:71721600-71723200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:71721800-71722400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr6:71721800-71722600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:71721800-71722600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:71721800-71722600	Enhancers	Fetal Kidney	kidney
18	chr6:71722000-71723200	Enhancers	Brain Anterior Caudate	brain
19	chr6:71722000-71724800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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