Variant report

Variant	rs7758130
Chromosome Location	chr6:71724200-71724201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10945275	0.93[AMR][1000 genomes]
rs1320315	0.85[AMR][1000 genomes]
rs4349772	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4400179	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4707871	0.86[AMR][1000 genomes]
rs473861	0.84[AMR][1000 genomes]
rs6900011	0.88[AMR][1000 genomes]
rs6910674	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6933662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749568	0.86[AMR][1000 genomes]
rs9342802	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9346416	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9354957	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9364120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966627	chr6:71699692-71726851	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71722000-71724800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:71722600-71724400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:71722600-71724400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:71723200-71724400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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