Variant report

Variant	rs9455274
Chromosome Location	chr6:71663949-71663950
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12212650	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1304029	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1535288	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1574490	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255286	0.88[CEU][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2347629	0.92[CEU][hapmap];0.97[YRI][hapmap]
rs2460691	0.85[AMR][1000 genomes]
rs2460696	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2474918	0.86[YRI][hapmap];0.84[AMR][1000 genomes]
rs2504739	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4707868	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4707869	0.92[CEU][hapmap];0.86[YRI][hapmap]
rs62420337	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914786	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6922893	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7749568	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9294882	0.92[CEU][hapmap];0.93[YRI][hapmap]
rs9446311	0.84[CEU][hapmap]
rs9446313	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9455273	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455275	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455277	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886148	chr6:71623253-71694742	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71663200-71664000	Active TSS	Fetal Brain Female	brain
2	chr6:71663400-71665800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr6:71663600-71664200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:71663600-71664200	Enhancers	Fetal Brain Male	brain
5	chr6:71663600-71667000	Active TSS	Brain Cingulate Gyrus	brain
6	chr6:71663800-71667200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr6:71663800-71667600	Active TSS	Brain Anterior Caudate	brain

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