Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10785646	0.82[EUR][1000 genomes]
rs10881011	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10881013	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11183666	0.83[EUR][1000 genomes]
rs11183671	0.81[EUR][1000 genomes]
rs11183672	0.82[EUR][1000 genomes]
rs11609950	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12423364	0.83[EUR][1000 genomes]
rs2465221	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2465222	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465223	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465227	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465228	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465229	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465230	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2465232	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2465617	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4586261	0.83[EUR][1000 genomes]
rs6582686	0.84[EUR][1000 genomes]
rs7138703	0.83[EUR][1000 genomes]
rs7295618	0.84[EUR][1000 genomes]
rs7966987	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47316200-47320600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:47318800-47320600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr12:47319800-47321000	Enhancers	Primary monocytes fromperipheralblood	blood

Quick Search: