Variant report

Variant	rs11183671
Chromosome Location	chr12:47349020-47349021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10785646	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10881009	0.84[EUR][1000 genomes]
rs10881011	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881013	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11183661	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183665	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183666	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11183672	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11609950	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12229470	0.84[EUR][1000 genomes]
rs12423364	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1986584	0.84[EUR][1000 genomes]
rs2250595	0.82[EUR][1000 genomes]
rs2253630	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2465221	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2465222	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2465223	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2465227	0.85[EUR][1000 genomes]
rs2465228	0.85[EUR][1000 genomes]
rs2465229	0.81[EUR][1000 genomes]
rs2465230	0.81[EUR][1000 genomes]
rs2465232	0.81[EUR][1000 genomes]
rs2465597	0.81[EUR][1000 genomes]
rs2465617	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2465627	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2465628	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2465630	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4405401	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4586261	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6582686	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7137808	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7138703	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7295618	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7962539	0.83[EUR][1000 genomes]
rs7963326	0.84[EUR][1000 genomes]
rs7966987	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7975211	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47337000-47350400	Weak transcription	Psoas Muscle	Psoas
2	chr12:47338800-47349800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr12:47343200-47352800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr12:47346600-47349400	Weak transcription	HSMMtube	muscle
5	chr12:47346600-47351800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:47346800-47350200	Weak transcription	HSMM	muscle
7	chr12:47346800-47350600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr12:47347200-47350200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr12:47347600-47352000	Weak transcription	Hela-S3	cervix

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