Variant report

Variant	rs11183661
Chromosome Location	chr12:47331024-47331025
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:46764818..46766681-chr12:47330944..47333454,2	K562	blood:
2	chr12:46764966..46766816-chr12:47330636..47333460,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134294	Chromatin interaction
ENSG00000258096	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10785646	0.89[EUR][1000 genomes]
rs10881009	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10881011	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881013	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183644	0.85[AFR][1000 genomes]
rs11183665	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183666	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183671	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183672	0.89[EUR][1000 genomes]
rs11609950	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12229470	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12423364	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1986584	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2250595	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2253630	0.82[EUR][1000 genomes]
rs2465617	0.90[ASN][1000 genomes]
rs2465627	0.82[EUR][1000 genomes]
rs2465628	0.82[EUR][1000 genomes]
rs2465630	0.82[EUR][1000 genomes]
rs4405401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586261	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6582686	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7137439	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7137808	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7138703	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7295618	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7962539	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7963326	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7966987	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7972871	0.80[AFR][1000 genomes]
rs7975211	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7978950	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47328000-47331600	Enhancers	Liver	Liver
2	chr12:47328200-47332000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr12:47328400-47331600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:47328400-47331800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:47330200-47331600	Weak transcription	HepG2	liver
6	chr12:47331000-47332400	Enhancers	HSMM	muscle

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