Variant report

Variant	rs7295618
Chromosome Location	chr12:47319585-47319586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:47316329..47319904-chr12:47321283..47323610,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10785646	0.92[EUR][1000 genomes]
rs10881009	0.83[EUR][1000 genomes]
rs10881011	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881013	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183661	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11183665	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183666	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183671	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11183672	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11609950	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12229470	0.82[EUR][1000 genomes]
rs12423364	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1986584	0.83[EUR][1000 genomes]
rs2253630	0.85[EUR][1000 genomes]
rs2465221	0.80[EUR][1000 genomes]
rs2465222	0.80[EUR][1000 genomes]
rs2465223	0.80[EUR][1000 genomes]
rs2465227	0.80[EUR][1000 genomes]
rs2465228	0.80[EUR][1000 genomes]
rs2465229	0.84[EUR][1000 genomes]
rs2465230	0.84[EUR][1000 genomes]
rs2465232	0.84[EUR][1000 genomes]
rs2465597	0.84[EUR][1000 genomes]
rs2465617	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2465627	0.85[EUR][1000 genomes]
rs2465628	0.85[EUR][1000 genomes]
rs2465630	0.85[EUR][1000 genomes]
rs4405401	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4586261	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6582686	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7137808	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7138703	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7963326	0.83[EUR][1000 genomes]
rs7966987	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975211	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47315200-47319800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr12:47316200-47320600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:47316400-47320400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:47318800-47320600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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