Variant report

Variant	rs10881013
Chromosome Location	chr12:47327801-47327802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:47297249..47299420-chr12:47327492..47329944,2	K562	blood:
2	chr12:46765046..46767739-chr12:47326428..47329322,2	MCF-7	breast:
3	chr12:46764006..46767949-chr12:47324189..47328180,4	MCF-7	breast:
4	chr12:47162188..47163605-chr12:47327626..47328350,3	MCF-7	breast:
5	chr12:47075526..47076624-chr12:47327505..47328462,4	MCF-7	breast:
6	chr12:47069383..47070015-chr12:47327153..47328077,2	MCF-7	breast:
7	chr12:47068145..47070667-chr12:47326335..47329369,3	MCF-7	breast:
8	chr12:47071288..47071831-chr12:47327445..47328145,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000139209	Chromatin interaction
ENSG00000271642	Chromatin interaction
ENSG00000258096	Chromatin interaction
ENSG00000134294	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10785646	0.93[EUR][1000 genomes]
rs10881009	0.82[EUR][1000 genomes]
rs10881011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183661	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183665	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183666	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183671	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11183672	0.93[EUR][1000 genomes]
rs11609950	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12229470	0.81[EUR][1000 genomes]
rs12423364	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1986584	0.82[EUR][1000 genomes]
rs2253630	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2465221	0.82[EUR][1000 genomes]
rs2465222	0.82[EUR][1000 genomes]
rs2465223	0.82[EUR][1000 genomes]
rs2465227	0.82[EUR][1000 genomes]
rs2465228	0.82[EUR][1000 genomes]
rs2465229	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2465230	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2465232	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2465597	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2465617	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2465627	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2465628	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2465630	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4405401	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4586261	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6582686	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7137808	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7138703	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7295618	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7963326	0.82[EUR][1000 genomes]
rs7966987	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7975211	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47324200-47328000	Weak transcription	Liver	Liver
2	chr12:47327400-47328200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr12:47327600-47328400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr12:47327800-47328000	Enhancers	HepG2	liver

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