Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10785646	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10881011	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs10881013	0.81[CEU][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11183661	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs11183665	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11183666	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11183671	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11183672	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11609950	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12423364	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2250595	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2253630	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2465628	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2465630	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4405401	0.82[EUR][1000 genomes]
rs4586261	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6582686	0.84[EUR][1000 genomes]
rs7138703	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7295618	0.85[EUR][1000 genomes]
rs7962539	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7966987	0.87[EUR][1000 genomes]
rs7975211	0.83[EUR][1000 genomes]
rs7978950	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47343200-47352800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr12:47349400-47352800	Enhancers	HSMMtube	muscle
3	chr12:47350600-47352600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:47350600-47353400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr12:47350800-47352600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr12:47350800-47352600	Weak transcription	NHDF-Ad	bronchial
7	chr12:47350800-47353000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr12:47350800-47357400	Weak transcription	Left Ventricle	heart
9	chr12:47351000-47352800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:47351000-47352800	Enhancers	Liver	Liver
11	chr12:47351000-47353200	Weak transcription	Fetal Heart	heart
12	chr12:47351200-47352800	Weak transcription	HSMM	muscle
13	chr12:47351800-47353400	Enhancers	HepG2	liver
14	chr12:47351800-47354000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr12:47352000-47352600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr12:47352000-47355000	Enhancers	Hela-S3	cervix
17	chr12:47352200-47352600	Weak transcription	Fetal Muscle Leg	muscle
18	chr12:47352200-47352600	Weak transcription	Psoas Muscle	Psoas
19	chr12:47352200-47354000	Enhancers	A549	lung
20	chr12:47352400-47354000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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