Variant report

Variant	rs10881011
Chromosome Location	chr12:47325905-47325906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:47324260..47326005-chr12:47328595..47330791,2	K562	blood:
2	chr12:46764006..46767949-chr12:47324189..47328180,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258096	Chromatin interaction
ENSG00000134294	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10785646	0.94[EUR][1000 genomes]
rs10881009	0.83[EUR][1000 genomes]
rs10881013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183661	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11183665	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183666	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183671	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11183672	0.94[EUR][1000 genomes]
rs11609950	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12229470	0.82[EUR][1000 genomes]
rs12423364	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1986584	0.83[EUR][1000 genomes]
rs2253630	0.87[EUR][1000 genomes]
rs2465221	0.83[EUR][1000 genomes]
rs2465222	0.83[EUR][1000 genomes]
rs2465223	0.83[EUR][1000 genomes]
rs2465227	0.83[EUR][1000 genomes]
rs2465228	0.83[EUR][1000 genomes]
rs2465229	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2465230	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2465232	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2465597	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2465617	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2465627	0.87[EUR][1000 genomes]
rs2465628	0.87[EUR][1000 genomes]
rs2465630	0.87[EUR][1000 genomes]
rs4405401	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4586261	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6582686	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7137808	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7138703	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7295618	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963326	0.83[EUR][1000 genomes]
rs7966987	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975211	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47324200-47328000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links