Variant report

Variant	rs2489312
Chromosome Location	chr1:225107191-225107192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1031995	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10915725	0.85[ASN][1000 genomes]
rs12120196	0.85[ASN][1000 genomes]
rs2202536	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2405782	0.85[ASN][1000 genomes]
rs2405939	0.84[AFR][1000 genomes]
rs2456327	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2800230	0.90[ASN][1000 genomes]
rs2800238	0.87[ASN][1000 genomes]
rs2800239	0.87[ASN][1000 genomes]
rs2897233	0.81[ASN][1000 genomes]
rs56073443	0.81[ASN][1000 genomes]
rs58836662	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225102400-225110000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:225106800-225107600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:225106800-225107600	Active TSS	Duodenum Mucosa	Duodenum
4	chr1:225107000-225107200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:225107000-225107400	Enhancers	Dnd41	blood
6	chr1:225107000-225107600	Flanking Active TSS	Liver	Liver
7	chr1:225107000-225107800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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