Variant report

Variant	rs56073443
Chromosome Location	chr1:225032041-225032042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10915723	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10915725	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12120196	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2248249	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2405782	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2489312	0.81[ASN][1000 genomes]
rs2800230	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2800235	0.80[AMR][1000 genomes]
rs2800236	0.80[AMR][1000 genomes]
rs2800237	0.80[AMR][1000 genomes]
rs2800238	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2800239	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2897233	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58836662	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225028600-225039200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:225030200-225033200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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