Variant report

Variant	rs2405782
Chromosome Location	chr1:225039835-225039836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224700475..224701243-chr1:225038899..225039835,3	MCF-7	breast:
2	chr1:224701135..224702071-chr1:225038782..225040015,6	K562	blood:
3	chr1:224701549..224702083-chr1:225038942..225039865,2	MCF-7	breast:
4	chr1:224831973..224833573-chr1:225038934..225041311,18	MCF-7	breast:
5	chr1:225004248..225005816-chr1:225039220..225040837,2	MCF-7	breast:
6	chr1:224888452..224889183-chr1:225039336..225039976,2	MCF-7	breast:
7	chr1:225037838..225040570-chr1:225044190..225046369,2	MCF-7	breast:
8	chr1:225038859..225040446-chr1:225045344..225047450,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10915723	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10915725	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10915726	0.83[AMR][1000 genomes]
rs12120196	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248249	0.95[EUR][1000 genomes]
rs2405783	0.83[AMR][1000 genomes]
rs2489312	0.85[ASN][1000 genomes]
rs2800230	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2800236	0.80[EUR][1000 genomes]
rs2800237	0.80[EUR][1000 genomes]
rs2800238	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2800239	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2897233	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3856143	0.83[AMR][1000 genomes]
rs56073443	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58836662	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7552247	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225038600-225040000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:225038600-225040600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:225038800-225040800	Enhancers	Pancreas	Pancrea
4	chr1:225038800-225041200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:225039000-225042000	Enhancers	Dnd41	blood
6	chr1:225039200-225040200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:225039400-225040000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr1:225039400-225040000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:225039400-225040200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:225039400-225040200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:225039400-225040800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr1:225039400-225040800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:225039400-225040800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:225039400-225040800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:225039600-225040800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:225039600-225040800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:225039800-225040800	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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