Variant report

Variant rs2500414
Chromosome Location chr20:25387911-25387912
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25384200-25388000 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr20:25384400-25388000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr20:25387600-25388000 Flanking Active TSS A549 lung
4 chr20:25387600-25388000 Active TSS HepG2 liver
5 chr20:25387600-25388200 Flanking Active TSS Dnd41 blood
6 chr20:25387600-25389000 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
7 chr20:25387600-25389200 Active TSS GM12878-XiMat blood
8 chr20:25387600-25389400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr20:25387800-25388000 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
10 chr20:25387800-25388000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
11 chr20:25387800-25388000 Enhancers Primary monocytes fromperipheralblood blood
12 chr20:25387800-25388000 Active TSS Primary neutrophils fromperipheralblood blood
13 chr20:25387800-25388000 Enhancers Primary B cells from peripheral blood blood
14 chr20:25387800-25388000 Active TSS Primary hematopoietic stem cells blood
15 chr20:25387800-25388000 Enhancers Primary Natural Killer cells fromperipheralblood blood
16 chr20:25387800-25388000 Active TSS Primary mononuclear cells fromperipheralblood Blood
17 chr20:25387800-25388000 Active TSS Liver Liver
18 chr20:25387800-25388000 Enhancers Brain Angular Gyrus brain
19 chr20:25387800-25388000 Enhancers Brain Hippocampus Middle brain
20 chr20:25387800-25388000 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
21 chr20:25387800-25388000 Enhancers Brain Substantia Nigra brain
22 chr20:25387800-25388000 Enhancers Fetal Intestine Small intestine
23 chr20:25387800-25388000 Active TSS Fetal Muscle Trunk muscle
24 chr20:25387800-25388000 Active TSS Placenta Placenta
25 chr20:25387800-25388000 Flanking Active TSS Osteobl bone
26 chr20:25387800-25388200 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
27 chr20:25387800-25388200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
28 chr20:25387800-25388200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
29 chr20:25387800-25388200 Active TSS Primary T helper cells fromperipheralblood blood
30 chr20:25387800-25388200 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
31 chr20:25387800-25388200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr20:25387800-25388200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr20:25387800-25388200 Flanking Active TSS Duodenum Mucosa Duodenum
34 chr20:25387800-25388200 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
35 chr20:25387800-25388200 Active TSS Right Atrium heart
36 chr20:25387800-25388200 Flanking Active TSS Skeletal Muscle Male skeletal muscle
37 chr20:25387800-25388200 Active TSS Stomach Smooth Muscle stomach
38 chr20:25387800-25388200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
39 chr20:25387800-25388200 Flanking Active TSS NH-A brain
40 chr20:25387800-25388200 Flanking Active TSS NHLF lung
41 chr20:25387800-25388400 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr20:25387800-25388400 Enhancers Fetal Heart heart
43 chr20:25387800-25388400 Active TSS Skeletal Muscle Female skeletal muscle
44 chr20:25387800-25388600 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr20:25387800-25388600 Active TSS Primary T cells from cord blood blood
46 chr20:25387800-25388600 Active TSS Primary T helper naive cells fromperipheralblood blood
47 chr20:25387800-25388600 Active TSS Muscle Satellite Cultured Cells --
48 chr20:25387800-25388600 Active TSS Brain Anterior Caudate brain
49 chr20:25387800-25388600 Active TSS Brain Cingulate Gyrus brain
50 chr20:25387800-25388600 Active TSS Colon Smooth Muscle Colon

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