Variant report

Variant rs400916
Chromosome Location chr20:25479245-25479246
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25427200-25488200 Weak transcription Stomach Mucosa stomach
2 chr20:25430200-25484400 Strong transcription Fetal Stomach stomach
3 chr20:25431800-25484200 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr20:25446000-25489600 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr20:25446400-25488200 Weak transcription Right Atrium heart
6 chr20:25448200-25490600 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr20:25448600-25484200 Weak transcription Duodenum Mucosa Duodenum
8 chr20:25448800-25480800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr20:25451400-25488800 Weak transcription Rectal Smooth Muscle rectum
10 chr20:25453400-25494400 Strong transcription Brain Germinal Matrix brain
11 chr20:25457800-25489000 Weak transcription Placenta Placenta
12 chr20:25459800-25489800 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr20:25462800-25488200 Weak transcription Colonic Mucosa Colon
14 chr20:25465000-25483000 Weak transcription Brain Cingulate Gyrus brain
15 chr20:25465400-25481600 Weak transcription Brain Inferior Temporal Lobe brain
16 chr20:25465600-25490000 Weak transcription Brain Angular Gyrus brain
17 chr20:25465800-25488000 Weak transcription Fetal Kidney kidney
18 chr20:25466000-25484200 Weak transcription Fetal Brain Male brain
19 chr20:25467400-25484200 Weak transcription Left Ventricle heart
20 chr20:25467400-25491800 Weak transcription Primary T cells from cord blood blood
21 chr20:25467600-25488000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr20:25468600-25484200 Weak transcription HUVEC blood vessel
23 chr20:25469800-25484200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr20:25470000-25483000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr20:25470000-25488000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr20:25470000-25488000 Weak transcription Osteobl bone
27 chr20:25470200-25484200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr20:25470600-25484200 Weak transcription NHLF lung
29 chr20:25470800-25480800 Weak transcription Fetal Lung lung
30 chr20:25470800-25484200 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr20:25470800-25484400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr20:25471000-25488200 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr20:25471400-25482400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr20:25471400-25483000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr20:25472000-25483600 Weak transcription Lung lung
36 chr20:25472000-25484200 Weak transcription Adipose Nuclei Adipose
37 chr20:25472400-25483200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr20:25472400-25484200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
39 chr20:25472600-25479400 Weak transcription HepG2 liver
40 chr20:25472600-25481800 Weak transcription H1 Cell Line embryonic stem cell
41 chr20:25473200-25487800 Weak transcription Fetal Heart heart
42 chr20:25473400-25484400 Strong transcription Ovary ovary
43 chr20:25473400-25494400 Strong transcription Fetal Brain Female brain
44 chr20:25473600-25494600 Strong transcription HUES6 Cell Line embryonic stem cell
45 chr20:25473600-25494600 Strong transcription Breast Myoepithelial Primary Cells Breast
46 chr20:25473800-25479800 Strong transcription Fetal Intestine Large intestine
47 chr20:25473800-25485800 Strong transcription Fetal Intestine Small intestine
48 chr20:25473800-25494200 Strong transcription Thymus Thymus
49 chr20:25474400-25495200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr20:25474600-25484400 Strong transcription Fetal Adrenal Gland Adrenal Gland

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