The 2.0 version of rSNPBase

Variant report

Variant rs6050735
Chromosome Location chr20:25616382-25616383
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25605400-25616800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr20:25605400-25628600 Weak transcription Left Ventricle heart
3 chr20:25605400-25630400 Weak transcription Aorta Aorta
4 chr20:25605600-25616400 Weak transcription Brain Inferior Temporal Lobe brain
5 chr20:25605600-25616400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr20:25605600-25616400 Weak transcription Thymus Thymus
7 chr20:25605600-25616600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr20:25605600-25616600 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr20:25605600-25616800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr20:25605600-25616800 Weak transcription Primary T cells from cord blood blood
11 chr20:25605600-25616800 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr20:25605600-25618000 Weak transcription NH-A brain
13 chr20:25605600-25619200 Weak transcription Liver Liver
14 chr20:25605600-25627000 Weak transcription Duodenum Mucosa Duodenum
15 chr20:25605600-25628400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr20:25605600-25628600 Weak transcription Colon Smooth Muscle Colon
17 chr20:25605600-25630200 Weak transcription Fetal Intestine Large intestine
18 chr20:25605600-25635000 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr20:25605600-25654600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr20:25605800-25616800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr20:25606200-25616600 Weak transcription Fetal Muscle Leg muscle
22 chr20:25606200-25617600 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr20:25606200-25626400 Weak transcription A549 lung
24 chr20:25607400-25616600 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr20:25607400-25617000 Weak transcription K562 blood
26 chr20:25607600-25617000 Weak transcription H1 Cell Line embryonic stem cell
27 chr20:25607800-25623000 Weak transcription iPS-15b Cell Line embryonic stem cell
28 chr20:25609200-25653400 Weak transcription Brain Substantia Nigra brain
29 chr20:25610200-25630400 Weak transcription Ovary ovary
30 chr20:25610200-25635600 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr20:25610600-25625000 Weak transcription HSMMtube muscle
32 chr20:25610600-25626200 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr20:25610600-25630600 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr20:25611400-25653200 Weak transcription Fetal Intestine Small intestine
35 chr20:25612200-25616600 Weak transcription Fetal Thymus thymus
36 chr20:25612600-25617400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr20:25613000-25616400 Weak transcription Fetal Muscle Trunk muscle
38 chr20:25613400-25635000 Weak transcription Hela-S3 cervix
39 chr20:25613600-25624000 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr20:25613600-25635400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr20:25613800-25617600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr20:25614000-25616800 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr20:25614200-25626000 Weak transcription Rectal Smooth Muscle rectum
44 chr20:25614400-25616600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr20:25614400-25632400 Weak transcription Osteobl bone
46 chr20:25614600-25625800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr20:25614600-25628400 Weak transcription Stomach Smooth Muscle stomach
48 chr20:25614600-25635000 Weak transcription NHEK skin
49 chr20:25615000-25617600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr20:25615000-25617800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015