The 2.0 version of rSNPBase

Variant report

Variant rs6050786
Chromosome Location chr20:25662270-25662271
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25653000-25663600 Strong transcription HSMM muscle
2 chr20:25653200-25662800 Strong transcription Fetal Lung lung
3 chr20:25653400-25662400 Strong transcription Liver Liver
4 chr20:25653400-25663600 Strong transcription Dnd41 blood
5 chr20:25653400-25664200 Strong transcription Stomach Smooth Muscle stomach
6 chr20:25653600-25662600 Strong transcription HUES64 Cell Line embryonic stem cell
7 chr20:25653600-25663200 Strong transcription HepG2 liver
8 chr20:25653800-25664200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
9 chr20:25654000-25662600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr20:25654000-25663800 Weak transcription Small Intestine intestine
11 chr20:25656400-25662600 Strong transcription Adipose Nuclei Adipose
12 chr20:25656600-25667200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr20:25657200-25664400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr20:25657200-25666000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
15 chr20:25657200-25667200 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr20:25657200-25674200 Weak transcription Fetal Heart heart
17 chr20:25657400-25663800 Weak transcription HSMMtube muscle
18 chr20:25657400-25666000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr20:25657400-25666000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr20:25657400-25666000 Weak transcription Psoas Muscle Psoas
21 chr20:25657400-25666600 Weak transcription Pancreas Pancrea
22 chr20:25657400-25676200 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr20:25657600-25663600 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr20:25657600-25664000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr20:25657600-25665800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr20:25657600-25665800 Weak transcription Right Ventricle heart
27 chr20:25657600-25665800 Weak transcription Spleen Spleen
28 chr20:25657600-25666000 Weak transcription Brain Substantia Nigra brain
29 chr20:25657600-25666000 Weak transcription Esophagus oesophagus
30 chr20:25657600-25666000 Weak transcription Gastric stomach
31 chr20:25657600-25666000 Weak transcription Placenta Amnion Placenta Amnion
32 chr20:25657600-25666600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr20:25657600-25667200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr20:25657600-25672200 Weak transcription H9 Cell Line embryonic stem cell
35 chr20:25657600-25672600 Weak transcription Fetal Brain Male brain
36 chr20:25657600-25676000 Weak transcription Stomach Mucosa stomach
37 chr20:25657600-25676200 Weak transcription Hela-S3 cervix
38 chr20:25657600-25676200 Weak transcription K562 blood
39 chr20:25657600-25676400 Weak transcription Primary neutrophils fromperipheralblood blood
40 chr20:25657800-25664400 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr20:25657800-25664400 Strong transcription A549 lung
42 chr20:25657800-25665200 Weak transcription iPS-20b Cell Line embryonic stem cell
43 chr20:25657800-25667000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr20:25657800-25667200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr20:25657800-25676000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr20:25657800-25676200 Weak transcription H1 Cell Line embryonic stem cell
47 chr20:25657800-25676200 Weak transcription Colonic Mucosa Colon
48 chr20:25657800-25676200 Weak transcription Rectal Mucosa Donor 31 rectum
49 chr20:25658000-25667200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr20:25658200-25676200 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015