The 2.0 version of rSNPBase

Variant report

Variant rs6037177
Chromosome Location chr20:25623723-25623724
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25605400-25628600 Weak transcription Left Ventricle heart
2 chr20:25605400-25630400 Weak transcription Aorta Aorta
3 chr20:25605600-25627000 Weak transcription Duodenum Mucosa Duodenum
4 chr20:25605600-25628400 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr20:25605600-25628600 Weak transcription Colon Smooth Muscle Colon
6 chr20:25605600-25630200 Weak transcription Fetal Intestine Large intestine
7 chr20:25605600-25635000 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr20:25605600-25654600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr20:25606200-25626400 Weak transcription A549 lung
10 chr20:25609200-25653400 Weak transcription Brain Substantia Nigra brain
11 chr20:25610200-25630400 Weak transcription Ovary ovary
12 chr20:25610200-25635600 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr20:25610600-25625000 Weak transcription HSMMtube muscle
14 chr20:25610600-25626200 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr20:25610600-25630600 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr20:25611400-25653200 Weak transcription Fetal Intestine Small intestine
17 chr20:25613400-25635000 Weak transcription Hela-S3 cervix
18 chr20:25613600-25624000 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr20:25613600-25635400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr20:25614200-25626000 Weak transcription Rectal Smooth Muscle rectum
21 chr20:25614400-25632400 Weak transcription Osteobl bone
22 chr20:25614600-25625800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr20:25614600-25628400 Weak transcription Stomach Smooth Muscle stomach
24 chr20:25614600-25635000 Weak transcription NHEK skin
25 chr20:25616000-25653600 Weak transcription Adipose Nuclei Adipose
26 chr20:25616200-25624400 Weak transcription Primary T cells fromperipheralblood blood
27 chr20:25616800-25626600 Weak transcription Brain Inferior Temporal Lobe brain
28 chr20:25617000-25650400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr20:25617200-25629600 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr20:25617400-25640400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr20:25617600-25653400 Weak transcription Fetal Muscle Trunk muscle
32 chr20:25617800-25625200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr20:25617800-25635000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr20:25618200-25624400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr20:25618200-25624400 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr20:25618200-25628200 Weak transcription Primary hematopoietic stem cells blood
37 chr20:25618200-25628400 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr20:25618400-25624400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr20:25618400-25624800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr20:25618400-25626000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr20:25618400-25626400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr20:25618400-25632200 Weak transcription Primary T cells from cord blood blood
43 chr20:25618400-25653600 Weak transcription Primary B cells from peripheral blood blood
44 chr20:25618400-25653600 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr20:25622800-25625200 Enhancers Thymus Thymus
46 chr20:25622800-25625400 Enhancers Fetal Thymus thymus
47 chr20:25623000-25624000 Enhancers iPS-15b Cell Line embryonic stem cell
48 chr20:25623000-25624200 Enhancers HUES48 Cell Line embryonic stem cell
49 chr20:25623000-25624400 Enhancers H9 Cell Line embryonic stem cell
50 chr20:25623200-25624000 Enhancers ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015