Variant report

Variant	rs2510639
Chromosome Location	chr11:120875383-120875384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10750179	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11218094	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs1621211	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2508456	0.82[ASN][1000 genomes]
rs478015	0.81[ASN][1000 genomes]
rs479160	0.81[CHB][hapmap]
rs513548	0.88[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.89[MEX][hapmap];0.82[ASN][1000 genomes]
rs524209	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs536333	0.82[ASN][1000 genomes]
rs536447	0.82[ASN][1000 genomes]
rs557501	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs560092	0.81[ASN][1000 genomes]
rs565597	0.81[ASN][1000 genomes]
rs595851	0.81[ASN][1000 genomes]
rs596869	0.81[ASN][1000 genomes]
rs598582	0.81[ASN][1000 genomes]
rs601817	0.94[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.89[MEX][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs607800	0.83[ASN][1000 genomes]
rs608154	0.94[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs611065	0.82[ASN][1000 genomes]
rs646543	0.88[CEU][hapmap];0.81[CHB][hapmap];0.89[MEX][hapmap]
rs652418	0.85[CEU][hapmap];0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs670413	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs676426	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7128009	0.88[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.89[MEX][hapmap];0.82[ASN][1000 genomes]
rs732480	0.84[MEX][hapmap]
rs7939112	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7948885	0.83[CEU][hapmap];0.91[CHB][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2510639	UPK2	cis	cerebellum	SCAN
rs2510639	PVRL1	cis	parietal	SCAN
rs2510639	BACE1	cis	parietal	SCAN
rs2510639	C2CD2L	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120873800-120875400	Enhancers	Fetal Lung	lung
2	chr11:120874000-120875400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr11:120874000-120875600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:120874200-120875400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:120874200-120875400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:120874200-120875400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:120874400-120875400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr11:120874400-120875400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:120874400-120875400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:120874400-120875400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:120874400-120875600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr11:120874600-120875400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:120874600-120875400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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