Variant report

Variant	rs652418
Chromosome Location	chr11:120841689-120841690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10750179	0.83[ASN][1000 genomes]
rs11218094	0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1621211	0.83[ASN][1000 genomes]
rs17124602	0.83[AMR][1000 genomes]
rs2510639	0.82[ASN][1000 genomes]
rs478015	0.84[ASN][1000 genomes]
rs479160	0.90[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs513548	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs524209	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536333	0.84[ASN][1000 genomes]
rs536447	0.84[ASN][1000 genomes]
rs557501	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs560092	0.84[ASN][1000 genomes]
rs565597	0.84[ASN][1000 genomes]
rs595851	0.84[ASN][1000 genomes]
rs596869	0.84[ASN][1000 genomes]
rs598582	0.84[ASN][1000 genomes]
rs601817	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs607800	0.81[ASN][1000 genomes]
rs608154	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611065	0.84[ASN][1000 genomes]
rs646543	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs670413	0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs676426	0.83[ASN][1000 genomes]
rs7128009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732480	0.81[AMR][1000 genomes]
rs7939112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948885	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120824000-120845200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:120829000-120845200	Weak transcription	Fetal Brain Male	brain
3	chr11:120833400-120856400	Weak transcription	Ovary	ovary
4	chr11:120835400-120845200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:120836800-120856400	Weak transcription	Brain Anterior Caudate	brain
6	chr11:120839200-120845800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:120841000-120845400	Weak transcription	Fetal Lung	lung
8	chr11:120841400-120842400	Weak transcription	HSMM	muscle
9	chr11:120841400-120842400	Weak transcription	HSMMtube	muscle

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