Variant report

Variant	rs7939112
Chromosome Location	chr11:120837575-120837576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120834004..120836449-chr11:120836974..120839502,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10750179	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11218094	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1621211	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17124602	0.85[AMR][1000 genomes]
rs2510639	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs478015	0.84[ASN][1000 genomes]
rs479160	0.91[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs513548	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs524209	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536333	0.84[ASN][1000 genomes]
rs536447	0.84[ASN][1000 genomes]
rs557501	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs560092	0.84[ASN][1000 genomes]
rs565597	0.84[ASN][1000 genomes]
rs595851	0.84[ASN][1000 genomes]
rs596869	0.84[ASN][1000 genomes]
rs598582	0.84[ASN][1000 genomes]
rs601817	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs607800	0.81[ASN][1000 genomes]
rs608154	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611065	0.84[ASN][1000 genomes]
rs646543	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs652418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs670413	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs676426	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7128009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732480	0.84[AMR][1000 genomes]
rs7948885	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120823600-120841600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120824000-120838600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:120824000-120845200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120829000-120845200	Weak transcription	Fetal Brain Male	brain
5	chr11:120833400-120837600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:120833400-120856400	Weak transcription	Ovary	ovary
7	chr11:120834400-120839200	Weak transcription	Fetal Lung	lung
8	chr11:120835400-120845200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:120836800-120856400	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links