Variant report

Variant	rs596869
Chromosome Location	chr11:120861145-120861146
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120858835..120862503-chr11:120866353..120869224,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10750179	0.93[ASN][1000 genomes]
rs11218094	0.96[ASN][1000 genomes]
rs1621211	0.83[ASN][1000 genomes]
rs2510639	0.81[ASN][1000 genomes]
rs478015	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479160	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs513548	0.84[ASN][1000 genomes]
rs524209	0.84[ASN][1000 genomes]
rs536333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs536447	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs557501	0.88[ASN][1000 genomes]
rs560092	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565597	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595851	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601817	0.82[ASN][1000 genomes]
rs607800	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs608154	0.84[ASN][1000 genomes]
rs611065	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs646543	0.89[ASN][1000 genomes]
rs652418	0.84[ASN][1000 genomes]
rs670413	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs676426	0.82[ASN][1000 genomes]
rs7128009	0.84[ASN][1000 genomes]
rs7939112	0.84[ASN][1000 genomes]
rs7948885	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3376837	chr11:120860642-120865340	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120857200-120862600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:120858000-120868800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:120860400-120861600	Weak transcription	Fetal Lung	lung
4	chr11:120860400-120864200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:120860400-120864400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:120860400-120868000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:120860600-120862600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:120860600-120863600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:120860800-120864000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:120861000-120864200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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