Variant report

Variant	rs676426
Chromosome Location	chr11:120871963-120871964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120866799..120869011-chr11:120871930..120874286,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10750179	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11218094	0.91[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1621211	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2508456	0.82[ASN][1000 genomes]
rs2510639	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs478015	0.82[ASN][1000 genomes]
rs479160	0.81[CHB][hapmap]
rs513548	0.88[CEU][hapmap];0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs524209	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs536333	0.83[ASN][1000 genomes]
rs536447	0.83[ASN][1000 genomes]
rs557501	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs560092	0.82[ASN][1000 genomes]
rs565597	0.82[ASN][1000 genomes]
rs595851	0.82[ASN][1000 genomes]
rs596869	0.82[ASN][1000 genomes]
rs598582	0.82[ASN][1000 genomes]
rs601817	0.94[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs607800	0.84[ASN][1000 genomes]
rs608154	0.94[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs611065	0.83[ASN][1000 genomes]
rs646543	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs652418	0.86[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs670413	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs7128009	0.88[CEU][hapmap];0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs7939112	0.89[CEU][hapmap];0.91[CHB][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7948885	0.83[CEU][hapmap];0.91[CHB][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120864600-120874400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:120865000-120874200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:120865000-120874600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:120868600-120874200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:120869400-120874400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:120869600-120874000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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