Variant report

Variant	rs2535937
Chromosome Location	chr7:126525358-126525359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1003037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1003038	1.00[CEU][hapmap]
rs10239010	1.00[CHB][hapmap]
rs1154326	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs1154333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1155655	1.00[CHB][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1155657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11767521	1.00[YRI][hapmap]
rs1204553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204555	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1204556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1204557	1.00[CEU][hapmap]
rs1204558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1204560	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs1204561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs1204562	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs1204565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204570	1.00[JPT][hapmap]
rs1204572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204573	1.00[CEU][hapmap]
rs1204574	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1204582	1.00[JPT][hapmap]
rs1204585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204590	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1204595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1361970	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419455	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1419456	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1419466	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17864092	1.00[JPT][hapmap]
rs2021162	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2109740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2254259	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2254260	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2518946	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2518952	0.87[EUR][1000 genomes]
rs2518956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2518959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2535928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2896388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs916614	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1849599	chr7:126507755-126557892	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv8211	chr7:126513183-126533173	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv1849801	chr7:126513882-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv10276	chr7:126514673-126533162	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv1846203	chr7:126514725-126531028	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv1832206	chr7:126514725-126533360	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv1812850	chr7:126514725-126536800	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv1800137	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv1815126	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv1826739	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1794204	chr7:126519897-126530828	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv1812181	chr7:126519897-126530828	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	nsv981575	chr7:126520557-126563439	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126523200-126527600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:126525000-126525400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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