The 2.0 version of rSNPBase

Variant report

Variant rs2542590
Chromosome Location chr2:54022268-54022269
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54015200-54024000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr2:54015200-54025400 Weak transcription Placenta Amnion Placenta Amnion
3 chr2:54015200-54029800 Weak transcription Esophagus oesophagus
4 chr2:54015200-54038200 Weak transcription Small Intestine intestine
5 chr2:54015200-54046200 Weak transcription H9 Cell Line embryonic stem cell
6 chr2:54015200-54046200 Weak transcription Aorta Aorta
7 chr2:54015200-54051600 Weak transcription Stomach Mucosa stomach
8 chr2:54015200-54053800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr2:54015600-54022800 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr2:54015600-54029600 Weak transcription Brain Inferior Temporal Lobe brain
11 chr2:54015600-54035600 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr2:54015600-54035800 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr2:54015600-54054600 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr2:54015800-54022400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr2:54015800-54022400 Weak transcription Primary B cells from cord blood blood
16 chr2:54015800-54022600 Weak transcription Brain Anterior Caudate brain
17 chr2:54015800-54022800 Weak transcription Fetal Brain Female brain
18 chr2:54015800-54023600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr2:54015800-54023600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr2:54015800-54023600 Weak transcription HSMMtube muscle
21 chr2:54015800-54024400 Weak transcription Brain Cingulate Gyrus brain
22 chr2:54015800-54024800 Weak transcription HUVEC blood vessel
23 chr2:54015800-54025000 Weak transcription Right Ventricle heart
24 chr2:54015800-54025200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr2:54015800-54026000 Weak transcription Fetal Brain Male brain
26 chr2:54015800-54028600 Weak transcription HMEC breast
27 chr2:54015800-54029400 Weak transcription Brain Substantia Nigra brain
28 chr2:54015800-54029600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr2:54015800-54029800 Weak transcription Psoas Muscle Psoas
30 chr2:54015800-54029800 Weak transcription Rectal Smooth Muscle rectum
31 chr2:54015800-54038400 Weak transcription Fetal Heart heart
32 chr2:54015800-54054000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr2:54016000-54022400 Weak transcription A549 lung
34 chr2:54016000-54031600 Weak transcription Primary T killer memory cells from peripheral blood blood
35 chr2:54016200-54022400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr2:54016200-54022400 Weak transcription Hela-S3 cervix
37 chr2:54016200-54028600 Weak transcription Colon Smooth Muscle Colon
38 chr2:54016400-54025400 Weak transcription Primary T killer naive cells fromperipheralblood blood
39 chr2:54016400-54043000 Weak transcription Gastric stomach
40 chr2:54016800-54025000 Weak transcription Spleen Spleen
41 chr2:54017400-54022400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr2:54017400-54023600 Weak transcription Lung lung
43 chr2:54017400-54031000 Weak transcription Ovary ovary
44 chr2:54017800-54027400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr2:54018000-54024400 Weak transcription Brain Hippocampus Middle brain
46 chr2:54018200-54022600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
47 chr2:54020200-54023400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr2:54020200-54025000 Weak transcription Pancreas Pancrea
49 chr2:54020200-54029600 Weak transcription Brain Angular Gyrus brain
50 chr2:54020200-54046200 Weak transcription Colonic Mucosa Colon

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Last update: Aug 31, 2015