The 2.0 version of rSNPBase

Variant report

Variant rs2553425
Chromosome Location chr3:101103623-101103624
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:101039800-101106600 Weak transcription Thymus Thymus
2 chr3:101043200-101105000 Weak transcription Brain Anterior Caudate brain
3 chr3:101045800-101110800 Weak transcription Placenta Amnion Placenta Amnion
4 chr3:101076200-101105600 Weak transcription Esophagus oesophagus
5 chr3:101083400-101105200 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr3:101084600-101106600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr3:101085000-101106600 Weak transcription Fetal Brain Female brain
8 chr3:101085600-101106800 Weak transcription Dnd41 blood
9 chr3:101085600-101137600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr3:101089600-101103800 Weak transcription HSMM muscle
11 chr3:101090400-101105200 Weak transcription Brain Germinal Matrix brain
12 chr3:101090600-101106600 Weak transcription Fetal Lung lung
13 chr3:101091000-101106800 Weak transcription Fetal Thymus thymus
14 chr3:101096400-101104200 Weak transcription Right Atrium heart
15 chr3:101096800-101104200 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr3:101096800-101106400 Weak transcription Aorta Aorta
17 chr3:101096800-101106600 Weak transcription Brain Substantia Nigra brain
18 chr3:101096800-101111600 Weak transcription Duodenum Mucosa Duodenum
19 chr3:101097600-101108000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr3:101099000-101104400 Weak transcription Primary T killer naive cells fromperipheralblood blood
21 chr3:101099000-101105200 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr3:101099000-101108000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr3:101099000-101110400 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr3:101099000-101114600 Weak transcription K562 blood
25 chr3:101099600-101104600 Weak transcription Primary monocytes fromperipheralblood blood
26 chr3:101099600-101105600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr3:101099600-101106800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr3:101099600-101107000 Weak transcription Primary B cells from cord blood blood
29 chr3:101099600-101107000 Weak transcription Primary hematopoietic stem cells blood
30 chr3:101099600-101107200 Weak transcription Primary hematopoietic stem cells short term culture blood
31 chr3:101099600-101107800 Weak transcription Monocytes-CD14+_RO01746 blood
32 chr3:101100200-101106600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr3:101100800-101105400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr3:101100800-101105800 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr3:101100800-101106400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr3:101100800-101108200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr3:101101200-101106600 Weak transcription Fetal Adrenal Gland Adrenal Gland
38 chr3:101101200-101108000 Weak transcription Primary T regulatory cells fromperipheralblood blood
39 chr3:101101400-101105000 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr3:101101600-101105600 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr3:101101600-101106200 Weak transcription Primary T killer memory cells from peripheral blood blood
42 chr3:101102000-101104600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
43 chr3:101102000-101106200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr3:101102000-101106800 Enhancers Left Ventricle heart
45 chr3:101102200-101103800 Strong transcription Fetal Intestine Small intestine
46 chr3:101102200-101104200 Weak transcription Colon Smooth Muscle Colon
47 chr3:101102400-101104600 Weak transcription Brain Hippocampus Middle brain
48 chr3:101102400-101105000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr3:101102400-101105200 Weak transcription Rectal Smooth Muscle rectum
50 chr3:101102400-101105600 Weak transcription Lung lung

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Last update: Aug 31, 2015