The 2.0 version of rSNPBase

Variant report

Variant rs1590009
Chromosome Location chr3:101193506-101193507
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:101160200-101210800 Weak transcription Skeletal Muscle Male skeletal muscle
2 chr3:101161400-101196800 Weak transcription Thymus Thymus
3 chr3:101161400-101207600 Weak transcription Aorta Aorta
4 chr3:101171200-101230400 Weak transcription Brain Substantia Nigra brain
5 chr3:101171400-101207800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr3:101174000-101202000 Weak transcription Brain Inferior Temporal Lobe brain
7 chr3:101174600-101211000 Weak transcription Duodenum Mucosa Duodenum
8 chr3:101176000-101211200 Weak transcription Muscle Satellite Cultured Cells --
9 chr3:101176600-101211600 Weak transcription HSMM muscle
10 chr3:101176800-101203200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr3:101176800-101211200 Weak transcription Stomach Smooth Muscle stomach
12 chr3:101176800-101211400 Weak transcription Colon Smooth Muscle Colon
13 chr3:101177600-101194200 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr3:101177600-101210800 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr3:101177800-101194200 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr3:101177800-101202000 Weak transcription Dnd41 blood
17 chr3:101177800-101202800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr3:101178200-101207000 Weak transcription Primary monocytes fromperipheralblood blood
19 chr3:101184200-101197000 Weak transcription Small Intestine intestine
20 chr3:101184400-101203200 Weak transcription Ovary ovary
21 chr3:101185800-101197800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
22 chr3:101186000-101194200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr3:101186000-101211000 Weak transcription Brain Anterior Caudate brain
24 chr3:101186000-101211000 Weak transcription Pancreas Pancrea
25 chr3:101186000-101211000 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr3:101186200-101193800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr3:101186200-101203200 Weak transcription Left Ventricle heart
28 chr3:101186200-101203400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr3:101186200-101203600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr3:101186200-101211200 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr3:101186400-101194200 Weak transcription Rectal Smooth Muscle rectum
32 chr3:101186400-101199400 Weak transcription Primary T helper naive cells from peripheral blood blood
33 chr3:101186400-101202600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr3:101186400-101210600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr3:101186400-101223600 Weak transcription Gastric stomach
36 chr3:101186800-101196200 Weak transcription Primary T helper cells fromperipheralblood blood
37 chr3:101186800-101196800 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr3:101186800-101197600 Weak transcription Primary T killer naive cells fromperipheralblood blood
39 chr3:101186800-101198000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
40 chr3:101186800-101203400 Weak transcription Primary T regulatory cells fromperipheralblood blood
41 chr3:101187000-101198000 Weak transcription Primary T helper naive cells fromperipheralblood blood
42 chr3:101187000-101211200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr3:101188200-101206800 Weak transcription Adipose Nuclei Adipose
44 chr3:101189000-101207000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr3:101190200-101194200 Weak transcription Fetal Muscle Leg muscle
46 chr3:101190200-101200200 Weak transcription Breast Myoepithelial Primary Cells Breast
47 chr3:101190800-101207200 Weak transcription Fetal Intestine Large intestine
48 chr3:101191000-101206800 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr3:101191200-101201600 Weak transcription Fetal Kidney kidney
50 chr3:101191400-101201800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015