Variant report

Variant	rs12489987
Chromosome Location	chr3:101269297-101269298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 287 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:287)

rs_ID	r²[population]
rs10048967	0.93[EUR][1000 genomes]
rs10804836	0.89[EUR][1000 genomes]
rs10804837	0.89[EUR][1000 genomes]
rs10936594	0.87[EUR][1000 genomes]
rs10936606	0.88[EUR][1000 genomes]
rs10936608	0.88[EUR][1000 genomes]
rs10936609	0.88[EUR][1000 genomes]
rs10936621	0.90[EUR][1000 genomes]
rs10936623	0.80[EUR][1000 genomes]
rs10936624	0.90[EUR][1000 genomes]
rs10936628	0.90[EUR][1000 genomes]
rs10936629	0.90[EUR][1000 genomes]
rs10936630	0.90[EUR][1000 genomes]
rs10936631	0.90[EUR][1000 genomes]
rs10936645	0.85[EUR][1000 genomes]
rs11710011	0.88[EUR][1000 genomes]
rs11923667	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11923990	0.94[EUR][1000 genomes]
rs11926358	0.91[EUR][1000 genomes]
rs12487776	0.94[EUR][1000 genomes]
rs12490635	0.94[EUR][1000 genomes]
rs12493306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493707	0.87[EUR][1000 genomes]
rs12494650	0.94[EUR][1000 genomes]
rs12494688	0.94[EUR][1000 genomes]
rs12496159	0.92[EUR][1000 genomes]
rs12496243	0.94[EUR][1000 genomes]
rs12497154	0.88[EUR][1000 genomes]
rs12497642	0.86[EUR][1000 genomes]
rs12630944	0.93[EUR][1000 genomes]
rs13314150	0.89[EUR][1000 genomes]
rs13315363	0.89[EUR][1000 genomes]
rs13317043	0.92[EUR][1000 genomes]
rs13318385	0.88[EUR][1000 genomes]
rs13324180	0.89[EUR][1000 genomes]
rs13324252	0.85[EUR][1000 genomes]
rs13326777	0.84[EUR][1000 genomes]
rs13440	0.85[EUR][1000 genomes]
rs1402254	0.87[EUR][1000 genomes]
rs1402255	0.87[EUR][1000 genomes]
rs1520653	0.88[EUR][1000 genomes]
rs1520656	0.84[EUR][1000 genomes]
rs1527548	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1547583	0.94[EUR][1000 genomes]
rs1590009	0.93[EUR][1000 genomes]
rs1609157	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1609158	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16843947	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17344542	0.89[EUR][1000 genomes]
rs1830233	0.93[EUR][1000 genomes]
rs1915310	0.88[EUR][1000 genomes]
rs1915311	0.88[EUR][1000 genomes]
rs1918407	0.94[EUR][1000 genomes]
rs1996691	0.85[EUR][1000 genomes]
rs2015153	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2049106	0.88[EUR][1000 genomes]
rs2049107	0.87[EUR][1000 genomes]
rs2049108	0.87[EUR][1000 genomes]
rs2062318	0.86[EUR][1000 genomes]
rs2068494	0.86[EUR][1000 genomes]
rs2114300	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2141181	0.92[EUR][1000 genomes]
rs2162303	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2162304	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178037	0.92[EUR][1000 genomes]
rs2271975	0.86[EUR][1000 genomes]
rs2317688	0.86[EUR][1000 genomes]
rs2317689	0.86[EUR][1000 genomes]
rs2317698	0.89[EUR][1000 genomes]
rs2317701	0.90[EUR][1000 genomes]
rs2317702	0.90[EUR][1000 genomes]
rs2317703	0.92[EUR][1000 genomes]
rs2317704	0.94[EUR][1000 genomes]
rs2317705	0.94[EUR][1000 genomes]
rs2317706	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2317743	0.86[EUR][1000 genomes]
rs2317744	0.87[EUR][1000 genomes]
rs2317747	0.86[EUR][1000 genomes]
rs2317750	0.87[EUR][1000 genomes]
rs28431102	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28496953	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2873540	0.94[EUR][1000 genomes]
rs2873547	0.88[EUR][1000 genomes]
rs28786444	0.92[EUR][1000 genomes]
rs28790912	0.89[EUR][1000 genomes]
rs28883302	0.87[EUR][1000 genomes]
rs34407049	0.89[EUR][1000 genomes]
rs34423488	0.88[EUR][1000 genomes]
rs35669002	0.89[EUR][1000 genomes]
rs35810131	0.91[EUR][1000 genomes]
rs3817409	0.86[EUR][1000 genomes]
rs3846085	0.86[EUR][1000 genomes]
rs3846086	0.86[EUR][1000 genomes]
rs3846087	0.94[EUR][1000 genomes]
rs3846088	0.94[EUR][1000 genomes]
rs3846090	0.87[EUR][1000 genomes]
rs3856771	0.94[EUR][1000 genomes]
rs3932406	0.94[EUR][1000 genomes]
rs4083062	0.86[EUR][1000 genomes]
rs4234486	0.86[EUR][1000 genomes]
rs4234487	0.86[EUR][1000 genomes]
rs4234489	0.93[EUR][1000 genomes]
rs4234490	0.94[EUR][1000 genomes]
rs4264710	0.81[EUR][1000 genomes]
rs4333067	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4334622	0.86[EUR][1000 genomes]
rs4350900	0.94[EUR][1000 genomes]
rs4383493	0.86[EUR][1000 genomes]
rs4476480	0.87[EUR][1000 genomes]
rs4479566	0.88[EUR][1000 genomes]
rs4479567	0.94[EUR][1000 genomes]
rs4482646	0.89[EUR][1000 genomes]
rs4508750	0.89[EUR][1000 genomes]
rs4510364	0.87[EUR][1000 genomes]
rs4518101	0.85[EUR][1000 genomes]
rs4525837	0.93[EUR][1000 genomes]
rs4527355	0.93[EUR][1000 genomes]
rs4536800	0.94[EUR][1000 genomes]
rs4553954	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4593004	0.85[EUR][1000 genomes]
rs4683841	0.86[EUR][1000 genomes]
rs4683842	0.86[EUR][1000 genomes]
rs4683843	0.88[EUR][1000 genomes]
rs4683845	0.90[EUR][1000 genomes]
rs4683846	0.91[EUR][1000 genomes]
rs4683848	0.94[EUR][1000 genomes]
rs4683849	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4683891	0.86[EUR][1000 genomes]
rs4683892	0.86[EUR][1000 genomes]
rs4683893	0.87[EUR][1000 genomes]
rs4683894	0.88[EUR][1000 genomes]
rs4683896	0.87[EUR][1000 genomes]
rs4683897	0.88[EUR][1000 genomes]
rs4683898	0.89[EUR][1000 genomes]
rs4683901	0.88[EUR][1000 genomes]
rs4683905	0.92[EUR][1000 genomes]
rs4683906	0.86[EUR][1000 genomes]
rs4683907	0.86[EUR][1000 genomes]
rs4683910	0.92[EUR][1000 genomes]
rs4683911	0.92[EUR][1000 genomes]
rs4683916	0.90[EUR][1000 genomes]
rs4683919	0.93[EUR][1000 genomes]
rs4683920	0.89[EUR][1000 genomes]
rs4683921	0.93[EUR][1000 genomes]
rs4683924	0.94[EUR][1000 genomes]
rs4683928	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5009801	0.86[EUR][1000 genomes]
rs55721154	0.85[EUR][1000 genomes]
rs55774498	0.93[EUR][1000 genomes]
rs55798976	0.94[EUR][1000 genomes]
rs55889649	0.91[EUR][1000 genomes]
rs55972805	0.89[EUR][1000 genomes]
rs56230566	0.87[EUR][1000 genomes]
rs56290975	0.94[EUR][1000 genomes]
rs56389316	0.93[EUR][1000 genomes]
rs56849605	0.87[EUR][1000 genomes]
rs57215339	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57312142	0.93[EUR][1000 genomes]
rs57412969	0.85[EUR][1000 genomes]
rs57511276	0.87[EUR][1000 genomes]
rs58415479	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59085990	0.92[EUR][1000 genomes]
rs59345491	0.93[EUR][1000 genomes]
rs59812872	0.94[EUR][1000 genomes]
rs6441597	0.86[EUR][1000 genomes]
rs6441598	0.86[EUR][1000 genomes]
rs6441609	0.93[EUR][1000 genomes]
rs66480882	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66516412	0.89[EUR][1000 genomes]
rs66715000	0.90[EUR][1000 genomes]
rs66758920	0.90[EUR][1000 genomes]
rs66862741	0.89[EUR][1000 genomes]
rs67541414	0.87[EUR][1000 genomes]
rs6762811	0.86[EUR][1000 genomes]
rs6763800	0.87[EUR][1000 genomes]
rs6765618	0.85[EUR][1000 genomes]
rs6766385	0.88[EUR][1000 genomes]
rs6769104	0.88[EUR][1000 genomes]
rs6769428	0.89[EUR][1000 genomes]
rs6769727	0.93[EUR][1000 genomes]
rs6772988	0.86[EUR][1000 genomes]
rs6777409	0.84[EUR][1000 genomes]
rs6779596	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6780873	0.93[EUR][1000 genomes]
rs6781680	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6783977	0.90[EUR][1000 genomes]
rs6784364	0.89[EUR][1000 genomes]
rs6784589	0.89[EUR][1000 genomes]
rs6785482	0.88[EUR][1000 genomes]
rs6790077	0.93[EUR][1000 genomes]
rs6802557	0.87[EUR][1000 genomes]
rs6806203	0.80[EUR][1000 genomes]
rs6806790	0.87[EUR][1000 genomes]
rs6807579	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6809755	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs722476	0.88[EUR][1000 genomes]
rs7355836	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7431086	0.83[EUR][1000 genomes]
rs7432176	0.88[EUR][1000 genomes]
rs7610102	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7610327	0.87[EUR][1000 genomes]
rs7612587	0.92[EUR][1000 genomes]
rs7612592	0.90[EUR][1000 genomes]
rs7614115	0.91[EUR][1000 genomes]
rs7616677	0.87[EUR][1000 genomes]
rs7616958	0.93[EUR][1000 genomes]
rs7618059	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7619540	0.93[EUR][1000 genomes]
rs7621830	0.94[EUR][1000 genomes]
rs7622500	0.85[EUR][1000 genomes]
rs7622922	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7627557	0.85[EUR][1000 genomes]
rs7628516	0.88[EUR][1000 genomes]
rs7629394	0.93[EUR][1000 genomes]
rs7630419	0.88[EUR][1000 genomes]
rs7631399	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7632798	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7634359	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7634759	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7635133	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7636229	0.85[EUR][1000 genomes]
rs7638912	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7646962	0.88[EUR][1000 genomes]
rs7649160	0.85[EUR][1000 genomes]
rs7653081	0.93[EUR][1000 genomes]
rs9290402	0.94[EUR][1000 genomes]
rs9290403	0.94[EUR][1000 genomes]
rs9290407	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs939443	0.86[EUR][1000 genomes]
rs939444	0.88[EUR][1000 genomes]
rs941311	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954994	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9637416	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9681493	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9682313	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9754948	0.88[EUR][1000 genomes]
rs9812471	0.92[EUR][1000 genomes]
rs9812849	0.92[EUR][1000 genomes]
rs9813887	0.88[EUR][1000 genomes]
rs9813945	0.86[EUR][1000 genomes]
rs9818337	0.87[EUR][1000 genomes]
rs9819957	0.92[EUR][1000 genomes]
rs9821273	0.92[EUR][1000 genomes]
rs9822318	0.89[EUR][1000 genomes]
rs9822356	0.89[EUR][1000 genomes]
rs9828605	0.93[EUR][1000 genomes]
rs9828817	0.90[EUR][1000 genomes]
rs9832452	0.88[EUR][1000 genomes]
rs9832573	0.88[EUR][1000 genomes]
rs9832848	0.87[EUR][1000 genomes]
rs9832890	0.87[EUR][1000 genomes]
rs9834710	0.90[EUR][1000 genomes]
rs9835989	0.89[EUR][1000 genomes]
rs9839820	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9840480	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9845216	0.89[EUR][1000 genomes]
rs9849685	0.94[EUR][1000 genomes]
rs9849770	0.85[EUR][1000 genomes]
rs9851091	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9851395	0.93[EUR][1000 genomes]
rs9852199	0.93[EUR][1000 genomes]
rs9852542	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9852574	0.88[EUR][1000 genomes]
rs9852617	0.94[EUR][1000 genomes]
rs9852782	0.94[EUR][1000 genomes]
rs9857389	0.88[EUR][1000 genomes]
rs9857723	0.88[EUR][1000 genomes]
rs9860228	0.87[EUR][1000 genomes]
rs9861229	0.86[EUR][1000 genomes]
rs9861403	0.86[EUR][1000 genomes]
rs9861774	0.88[EUR][1000 genomes]
rs9861976	0.84[EUR][1000 genomes]
rs9864932	0.93[EUR][1000 genomes]
rs9865059	0.93[EUR][1000 genomes]
rs9865178	0.92[EUR][1000 genomes]
rs9865244	0.92[EUR][1000 genomes]
rs9869697	0.87[EUR][1000 genomes]
rs9875156	0.86[EUR][1000 genomes]
rs9875181	0.87[EUR][1000 genomes]
rs9876418	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9876498	0.92[EUR][1000 genomes]
rs9877151	0.86[EUR][1000 genomes]
rs9877181	0.93[EUR][1000 genomes]
rs9877228	0.86[EUR][1000 genomes]
rs9880120	0.94[EUR][1000 genomes]
rs9881145	0.94[EUR][1000 genomes]
rs9882920	0.88[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12489987	SENP7	cis	Skin Sun Exposed Lower leg	GTEx
rs12489987	SENP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101268400-101275400	Weak transcription	K562	blood
2	chr3:101268600-101271600	Weak transcription	HepG2	liver
3	chr3:101269000-101269800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr3:101269200-101269600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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