Variant report

Variant	rs28431102
Chromosome Location	chr3:101270425-101270426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10048967	0.82[EUR][1000 genomes]
rs10936628	0.80[EUR][1000 genomes]
rs10936629	0.80[EUR][1000 genomes]
rs10936630	0.80[EUR][1000 genomes]
rs10936631	0.80[EUR][1000 genomes]
rs11923667	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11923990	0.82[EUR][1000 genomes]
rs11926358	0.81[EUR][1000 genomes]
rs12487776	0.82[EUR][1000 genomes]
rs12489987	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12490635	0.82[EUR][1000 genomes]
rs12493306	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12494650	0.82[EUR][1000 genomes]
rs12494688	0.82[EUR][1000 genomes]
rs12496159	0.81[EUR][1000 genomes]
rs12496243	0.82[EUR][1000 genomes]
rs12630944	0.82[EUR][1000 genomes]
rs13317043	0.81[EUR][1000 genomes]
rs1527548	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1547583	0.82[EUR][1000 genomes]
rs1590009	0.82[EUR][1000 genomes]
rs1609157	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1609158	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16843947	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1830233	0.82[EUR][1000 genomes]
rs1918407	0.82[EUR][1000 genomes]
rs2015153	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2114300	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2141181	0.81[EUR][1000 genomes]
rs2162303	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2162304	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2178037	0.81[EUR][1000 genomes]
rs2317703	0.81[EUR][1000 genomes]
rs2317704	0.82[EUR][1000 genomes]
rs2317705	0.82[EUR][1000 genomes]
rs2317706	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28496953	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2873540	0.82[EUR][1000 genomes]
rs28786444	0.81[EUR][1000 genomes]
rs35810131	0.81[EUR][1000 genomes]
rs3846087	0.82[EUR][1000 genomes]
rs3846088	0.82[EUR][1000 genomes]
rs3856771	0.82[EUR][1000 genomes]
rs3932406	0.82[EUR][1000 genomes]
rs4234489	0.82[EUR][1000 genomes]
rs4234490	0.82[EUR][1000 genomes]
rs4333067	0.83[AMR][1000 genomes]
rs4350900	0.82[EUR][1000 genomes]
rs4479567	0.82[EUR][1000 genomes]
rs4525837	0.82[EUR][1000 genomes]
rs4527355	0.82[EUR][1000 genomes]
rs4536800	0.82[EUR][1000 genomes]
rs4553954	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4683845	0.80[EUR][1000 genomes]
rs4683846	0.80[EUR][1000 genomes]
rs4683848	0.82[EUR][1000 genomes]
rs4683849	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4683905	0.81[EUR][1000 genomes]
rs4683910	0.81[EUR][1000 genomes]
rs4683911	0.81[EUR][1000 genomes]
rs4683919	0.82[EUR][1000 genomes]
rs4683921	0.82[EUR][1000 genomes]
rs4683924	0.82[EUR][1000 genomes]
rs4683928	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55774498	0.82[EUR][1000 genomes]
rs55798976	0.82[EUR][1000 genomes]
rs55889649	0.81[EUR][1000 genomes]
rs56290975	0.82[EUR][1000 genomes]
rs56389316	0.82[EUR][1000 genomes]
rs57215339	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57312142	0.82[EUR][1000 genomes]
rs58415479	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59085990	0.81[EUR][1000 genomes]
rs59345491	0.82[EUR][1000 genomes]
rs59812872	0.82[EUR][1000 genomes]
rs6441609	0.82[EUR][1000 genomes]
rs66480882	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6769727	0.82[EUR][1000 genomes]
rs6779596	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6780873	0.82[EUR][1000 genomes]
rs6781680	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6783977	0.80[EUR][1000 genomes]
rs6790077	0.82[EUR][1000 genomes]
rs6807579	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6809755	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7355836	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7610102	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7612587	0.81[EUR][1000 genomes]
rs7612592	0.80[EUR][1000 genomes]
rs7614115	0.81[EUR][1000 genomes]
rs7616958	0.82[EUR][1000 genomes]
rs7618059	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7619540	0.83[EUR][1000 genomes]
rs7621830	0.82[EUR][1000 genomes]
rs7622922	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7629394	0.82[EUR][1000 genomes]
rs7631399	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7632798	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7634359	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7634759	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7635133	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7638912	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7653081	0.82[EUR][1000 genomes]
rs9290402	0.82[EUR][1000 genomes]
rs9290403	0.82[EUR][1000 genomes]
rs9290407	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs941311	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs954994	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9637416	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9681493	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9682313	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9812471	0.81[EUR][1000 genomes]
rs9812849	0.81[EUR][1000 genomes]
rs9819957	0.81[EUR][1000 genomes]
rs9821273	0.81[EUR][1000 genomes]
rs9828605	0.82[EUR][1000 genomes]
rs9839820	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9840480	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9849685	0.82[EUR][1000 genomes]
rs9851091	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9851395	0.82[EUR][1000 genomes]
rs9852199	0.82[EUR][1000 genomes]
rs9852542	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9852617	0.82[EUR][1000 genomes]
rs9852782	0.82[EUR][1000 genomes]
rs9864932	0.82[EUR][1000 genomes]
rs9865059	0.81[EUR][1000 genomes]
rs9865178	0.81[EUR][1000 genomes]
rs9865244	0.81[EUR][1000 genomes]
rs9876418	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9876498	0.80[EUR][1000 genomes]
rs9877181	0.81[EUR][1000 genomes]
rs9880120	0.82[EUR][1000 genomes]
rs9881145	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28431102	SENP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101268400-101275400	Weak transcription	K562	blood
2	chr3:101268600-101271600	Weak transcription	HepG2	liver

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