Variant report

Variant	rs16843947
Chromosome Location	chr3:101238259-101238260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101230849..101233944-chr3:101235789..101239028,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138468	Chromatin interaction

Extended variants
information (count: 290 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:290)

rs_ID	r²[population]
rs10048967	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10804836	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs10804837	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs10936594	0.92[EUR][1000 genomes]
rs10936606	0.93[EUR][1000 genomes]
rs10936608	0.93[EUR][1000 genomes]
rs10936609	0.93[EUR][1000 genomes]
rs10936621	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.95[EUR][1000 genomes]
rs10936623	0.84[EUR][1000 genomes]
rs10936624	0.95[EUR][1000 genomes]
rs10936628	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.95[EUR][1000 genomes]
rs10936629	0.95[EUR][1000 genomes]
rs10936630	0.95[EUR][1000 genomes]
rs10936631	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.81[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.95[EUR][1000 genomes]
rs10936645	0.89[EUR][1000 genomes]
rs11710011	0.93[EUR][1000 genomes]
rs11923667	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11923990	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11926358	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12487776	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12489987	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12490635	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12492764	0.83[EUR][1000 genomes]
rs12493306	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12493707	0.92[EUR][1000 genomes]
rs12494650	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12494688	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12496159	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs12496243	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12497154	0.83[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs12497642	0.91[EUR][1000 genomes]
rs12630944	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13314150	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs13315363	0.94[EUR][1000 genomes]
rs13317043	1.00[CEU][hapmap];0.90[YRI][hapmap];0.97[EUR][1000 genomes]
rs13318385	0.93[EUR][1000 genomes]
rs13324180	0.94[EUR][1000 genomes]
rs13324252	0.90[EUR][1000 genomes]
rs13326777	0.88[EUR][1000 genomes]
rs13440	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes]
rs1402254	0.92[EUR][1000 genomes]
rs1402255	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs1520653	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs1520656	0.88[EUR][1000 genomes]
rs1527548	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1547583	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1590009	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1609157	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1609158	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17344542	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs1830233	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1915310	1.00[CEU][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes]
rs1915311	0.93[EUR][1000 genomes]
rs1918407	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1996691	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2015153	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2049106	0.93[EUR][1000 genomes]
rs2049107	0.92[EUR][1000 genomes]
rs2049108	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs2062318	0.90[EUR][1000 genomes]
rs2068494	0.90[EUR][1000 genomes]
rs2114300	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2141181	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs2162303	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2162304	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2178037	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs2271975	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2317688	0.90[EUR][1000 genomes]
rs2317689	0.90[EUR][1000 genomes]
rs2317698	0.94[EUR][1000 genomes]
rs2317701	0.95[EUR][1000 genomes]
rs2317702	1.00[CEU][hapmap];0.91[YRI][hapmap];0.95[EUR][1000 genomes]
rs2317703	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs2317704	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2317705	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2317706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2317743	0.90[EUR][1000 genomes]
rs2317744	0.92[EUR][1000 genomes]
rs2317747	0.91[EUR][1000 genomes]
rs2317750	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs2553419	0.89[CHD][hapmap];0.82[MEX][hapmap]
rs28431102	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28496953	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2873540	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2873547	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs28786444	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs28790912	0.94[EUR][1000 genomes]
rs28883302	0.92[EUR][1000 genomes]
rs34407049	0.94[EUR][1000 genomes]
rs34423488	0.93[EUR][1000 genomes]
rs35669002	0.94[EUR][1000 genomes]
rs35810131	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3817409	0.90[EUR][1000 genomes]
rs3846085	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs3846086	0.90[EUR][1000 genomes]
rs3846087	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3846088	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.82[LWK][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3846090	0.92[EUR][1000 genomes]
rs3856771	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3932406	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4083062	0.90[EUR][1000 genomes]
rs4234486	0.90[EUR][1000 genomes]
rs4234487	0.90[EUR][1000 genomes]
rs4234489	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4234490	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4264710	0.85[EUR][1000 genomes]
rs4333067	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4334622	0.90[EUR][1000 genomes]
rs4350900	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4383493	0.91[EUR][1000 genomes]
rs4476480	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[EUR][1000 genomes]
rs4479566	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs4479567	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4482646	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.94[EUR][1000 genomes]
rs4508750	0.94[EUR][1000 genomes]
rs4510364	0.92[EUR][1000 genomes]
rs4518101	0.90[EUR][1000 genomes]
rs4525837	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4527355	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4536800	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4553954	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4593004	0.90[EUR][1000 genomes]
rs4683841	0.90[EUR][1000 genomes]
rs4683842	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs4683843	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs4683845	0.95[EUR][1000 genomes]
rs4683846	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4683848	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4683849	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683891	0.90[EUR][1000 genomes]
rs4683892	1.00[CEU][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes]
rs4683893	0.92[EUR][1000 genomes]
rs4683894	0.93[EUR][1000 genomes]
rs4683896	0.92[EUR][1000 genomes]
rs4683897	0.93[EUR][1000 genomes]
rs4683898	0.94[EUR][1000 genomes]
rs4683901	0.96[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs4683905	0.96[EUR][1000 genomes]
rs4683906	0.91[EUR][1000 genomes]
rs4683907	0.91[EUR][1000 genomes]
rs4683910	0.96[CEU][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.80[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]
rs4683911	0.97[EUR][1000 genomes]
rs4683916	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4683919	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4683920	0.94[EUR][1000 genomes]
rs4683921	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4683924	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4683928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5009801	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs55721154	0.90[EUR][1000 genomes]
rs55774498	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55798976	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55889649	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55972805	0.94[EUR][1000 genomes]
rs56230566	0.92[EUR][1000 genomes]
rs56290975	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56389316	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs56849605	0.92[EUR][1000 genomes]
rs57215339	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57312142	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57412969	0.90[EUR][1000 genomes]
rs57511276	0.92[EUR][1000 genomes]
rs58415479	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59085990	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs59345491	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59812872	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6441597	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6441598	0.90[EUR][1000 genomes]
rs6441609	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66480882	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66516412	0.94[EUR][1000 genomes]
rs66715000	0.95[EUR][1000 genomes]
rs66758920	0.95[EUR][1000 genomes]
rs66862741	0.94[EUR][1000 genomes]
rs67541414	0.92[EUR][1000 genomes]
rs6762811	0.91[EUR][1000 genomes]
rs6763800	0.92[EUR][1000 genomes]
rs6765618	0.83[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs6766385	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs6769104	0.95[CEU][hapmap];0.90[YRI][hapmap];0.93[EUR][1000 genomes]
rs6769428	0.94[EUR][1000 genomes]
rs6769727	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6772988	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs6777409	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6779596	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6780873	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6781680	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6783977	0.95[EUR][1000 genomes]
rs6784364	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs6784589	0.94[EUR][1000 genomes]
rs6785482	0.93[EUR][1000 genomes]
rs6790077	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6802557	0.92[EUR][1000 genomes]
rs6806203	0.84[EUR][1000 genomes]
rs6806790	0.92[EUR][1000 genomes]
rs6807579	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6809755	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs722476	0.85[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs7355836	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7431086	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs7432176	0.93[EUR][1000 genomes]
rs7610102	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7610327	0.92[EUR][1000 genomes]
rs7612587	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs7612592	1.00[CEU][hapmap];0.91[YRI][hapmap];0.95[EUR][1000 genomes]
rs7614115	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7616677	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs7616958	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7618059	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7619540	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7621830	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7622500	0.90[EUR][1000 genomes]
rs7622922	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7627557	0.90[EUR][1000 genomes]
rs7628516	0.93[EUR][1000 genomes]
rs7629394	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7630419	0.88[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs7631399	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632798	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7634359	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7634759	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7635133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636229	0.90[EUR][1000 genomes]
rs7638912	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7646962	0.93[EUR][1000 genomes]
rs7649160	0.89[EUR][1000 genomes]
rs7653081	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9290402	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9290403	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9290407	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs939443	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes]
rs939444	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs941311	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs954994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9637416	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9681493	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9682313	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9754948	0.93[EUR][1000 genomes]
rs9755773	0.83[EUR][1000 genomes]
rs9812471	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs9812849	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs9813887	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[EUR][1000 genomes]
rs9813945	0.91[EUR][1000 genomes]
rs9818337	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs9819957	0.96[EUR][1000 genomes]
rs9821273	0.97[EUR][1000 genomes]
rs9822318	1.00[CEU][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs9822356	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs9828605	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9828817	0.95[EUR][1000 genomes]
rs9832452	0.93[EUR][1000 genomes]
rs9832573	0.93[EUR][1000 genomes]
rs9832848	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs9832890	1.00[CEU][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs9834710	0.95[EUR][1000 genomes]
rs9835989	0.94[EUR][1000 genomes]
rs9839820	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9840480	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9845216	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs9849685	0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9849770	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.82[LWK][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes]
rs9851091	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9851395	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9852199	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9852542	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9852574	0.93[EUR][1000 genomes]
rs9852617	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9852782	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9857389	0.93[EUR][1000 genomes]
rs9857723	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs9860228	0.92[EUR][1000 genomes]
rs9861229	0.91[EUR][1000 genomes]
rs9861403	0.91[EUR][1000 genomes]
rs9861774	0.93[EUR][1000 genomes]
rs9861976	0.89[EUR][1000 genomes]
rs9864932	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9865059	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9865178	0.97[EUR][1000 genomes]
rs9865244	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9869697	0.92[EUR][1000 genomes]
rs9875156	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes]
rs9875181	0.92[EUR][1000 genomes]
rs9876418	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9876498	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9877151	0.91[EUR][1000 genomes]
rs9877181	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9877228	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes]
rs9880120	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9881145	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9882920	0.93[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16843947	SENP7	cis	Skin Sun Exposed Lower leg	GTEx
rs16843947	SENP7	cis	multi-tissue	Pritchard
rs16843947	FAM55C	cis	lymphoblastoid	seeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101232800-101240200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:101233800-101238800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:101236200-101239600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:101236200-101241200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr3:101236800-101238400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr3:101237000-101240000	Enhancers	HUVEC	blood vessel
7	chr3:101237000-101241200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:101237600-101239400	Enhancers	Primary T cells from cord blood	blood
9	chr3:101237800-101238400	Enhancers	K562	blood
10	chr3:101237800-101239200	Enhancers	Hela-S3	cervix
11	chr3:101237800-101240000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:101237800-101240000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:101237800-101240000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:101237800-101240000	Enhancers	HepG2	liver
15	chr3:101237800-101240000	Weak transcription	HMEC	breast
16	chr3:101238000-101239000	Weak transcription	Fetal Thymus	thymus
17	chr3:101238000-101239200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:101238000-101239600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr3:101238000-101239600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:101238000-101239800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr3:101238000-101240000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:101238000-101240000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:101238000-101240000	Weak transcription	Thymus	Thymus
24	chr3:101238000-101242200	Enhancers	Primary T cells fromperipheralblood	blood
25	chr3:101238000-101242200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr3:101238200-101238400	Enhancers	GM12878-XiMat	blood
27	chr3:101238200-101238600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:101238200-101238600	Weak transcription	NHEK	skin
29	chr3:101238200-101239200	Enhancers	Fetal Intestine Small	intestine
30	chr3:101238200-101239600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr3:101238200-101240000	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

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