Variant report

Variant	rs954994
Chromosome Location	chr3:101253091-101253092
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101251684..101253784-chr3:101277583..101280668,3	K562	blood:
2	chr3:101251094..101253356-chr3:101294700..101296293,2	K562	blood:
3	chr3:101251480..101254099-chr3:101272638..101274456,2	K562	blood:
4	chr3:101249370..101250910-chr3:101251294..101253449,2	K562	blood:
5	chr3:101251061..101253475-chr3:101292374..101293886,2	K562	blood:
6	chr3:101241908..101244826-chr3:101250601..101253357,3	K562	blood:

Variant related genes	Relation type
ENSG00000081154	Chromatin interaction
ENSG00000242299	Chromatin interaction

Extended variants
information (count: 292 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:287)

rs_ID	r²[population]
rs10048967	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10804836	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[EUR][1000 genomes]
rs10804837	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[EUR][1000 genomes]
rs10936594	0.88[EUR][1000 genomes]
rs10936606	0.89[EUR][1000 genomes]
rs10936608	0.89[EUR][1000 genomes]
rs10936609	0.89[EUR][1000 genomes]
rs10936621	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs10936623	0.81[EUR][1000 genomes]
rs10936624	0.91[EUR][1000 genomes]
rs10936628	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs10936629	0.92[EUR][1000 genomes]
rs10936630	0.92[EUR][1000 genomes]
rs10936631	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs10936645	0.86[EUR][1000 genomes]
rs11710011	0.89[EUR][1000 genomes]
rs11923667	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11923990	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11926358	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12487776	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12489987	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12490635	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12493306	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12493707	0.88[EUR][1000 genomes]
rs12494650	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12494688	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12496159	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs12496243	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12497154	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12497642	0.88[EUR][1000 genomes]
rs12630944	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13314150	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs13315363	0.91[EUR][1000 genomes]
rs13317043	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs13318385	0.89[EUR][1000 genomes]
rs13324180	0.91[EUR][1000 genomes]
rs13324252	0.87[EUR][1000 genomes]
rs13326777	0.85[EUR][1000 genomes]
rs13440	0.86[EUR][1000 genomes]
rs1402254	0.88[EUR][1000 genomes]
rs1402255	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs1520653	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes]
rs1520656	0.85[EUR][1000 genomes]
rs1527548	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547583	0.96[EUR][1000 genomes]
rs1590009	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1609157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1609158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16843947	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17344542	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs1830233	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1915310	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[EUR][1000 genomes]
rs1915311	0.89[EUR][1000 genomes]
rs1918407	1.00[CEU][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1996691	0.86[EUR][1000 genomes]
rs2015153	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2049106	0.89[EUR][1000 genomes]
rs2049107	0.89[EUR][1000 genomes]
rs2049108	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes]
rs2062318	0.87[EUR][1000 genomes]
rs2068494	0.87[EUR][1000 genomes]
rs2114300	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2141181	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[EUR][1000 genomes]
rs2162303	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178037	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs2271975	0.87[EUR][1000 genomes]
rs2317688	0.87[EUR][1000 genomes]
rs2317689	0.87[EUR][1000 genomes]
rs2317698	0.90[EUR][1000 genomes]
rs2317701	0.92[EUR][1000 genomes]
rs2317702	1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[EUR][1000 genomes]
rs2317703	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs2317704	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2317705	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2317706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2317743	0.87[EUR][1000 genomes]
rs2317744	0.88[EUR][1000 genomes]
rs2317747	0.88[EUR][1000 genomes]
rs2317750	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes]
rs28431102	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28496953	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2873540	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2873547	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes]
rs28786444	0.94[EUR][1000 genomes]
rs28790912	0.90[EUR][1000 genomes]
rs28883302	0.88[EUR][1000 genomes]
rs34407049	0.90[EUR][1000 genomes]
rs34423488	0.90[EUR][1000 genomes]
rs35669002	0.90[EUR][1000 genomes]
rs35810131	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3817409	0.87[EUR][1000 genomes]
rs3846085	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes]
rs3846086	0.87[EUR][1000 genomes]
rs3846087	1.00[CEU][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3846088	1.00[CEU][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3846090	0.88[EUR][1000 genomes]
rs3856771	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3932406	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4083062	0.87[EUR][1000 genomes]
rs4234486	0.87[EUR][1000 genomes]
rs4234487	0.87[EUR][1000 genomes]
rs4234489	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4234490	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4264710	0.82[EUR][1000 genomes]
rs4333067	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4334622	0.87[EUR][1000 genomes]
rs4350900	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4383493	0.88[EUR][1000 genomes]
rs4476480	1.00[CEU][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes]
rs4479566	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes]
rs4479567	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4482646	1.00[CEU][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes]
rs4508750	0.90[EUR][1000 genomes]
rs4510364	0.89[EUR][1000 genomes]
rs4518101	0.87[EUR][1000 genomes]
rs4525837	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4527355	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4536800	1.00[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4553954	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4593004	0.87[EUR][1000 genomes]
rs4683841	0.87[EUR][1000 genomes]
rs4683842	1.00[CEU][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes]
rs4683843	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes]
rs4683845	0.92[EUR][1000 genomes]
rs4683846	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4683848	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4683849	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4683891	0.87[EUR][1000 genomes]
rs4683892	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs4683893	0.88[EUR][1000 genomes]
rs4683894	0.89[EUR][1000 genomes]
rs4683896	0.89[EUR][1000 genomes]
rs4683897	0.89[EUR][1000 genomes]
rs4683898	0.90[EUR][1000 genomes]
rs4683901	0.96[CEU][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes]
rs4683905	0.93[EUR][1000 genomes]
rs4683906	0.88[EUR][1000 genomes]
rs4683907	0.88[EUR][1000 genomes]
rs4683910	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs4683911	0.94[EUR][1000 genomes]
rs4683916	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4683919	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4683920	0.91[EUR][1000 genomes]
rs4683921	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4683924	1.00[CEU][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4683928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5009801	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes]
rs55721154	0.87[EUR][1000 genomes]
rs55774498	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55798976	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55889649	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs55972805	0.90[EUR][1000 genomes]
rs56230566	0.88[EUR][1000 genomes]
rs56290975	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56389316	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs56849605	0.88[EUR][1000 genomes]
rs57215339	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57312142	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs57412969	0.87[EUR][1000 genomes]
rs57511276	0.88[EUR][1000 genomes]
rs58415479	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59085990	0.94[EUR][1000 genomes]
rs59345491	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59812872	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441597	1.00[CEU][hapmap];0.81[YRI][hapmap];0.87[EUR][1000 genomes]
rs6441598	0.87[EUR][1000 genomes]
rs6441609	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66480882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66516412	0.90[EUR][1000 genomes]
rs66715000	0.92[EUR][1000 genomes]
rs66758920	0.92[EUR][1000 genomes]
rs66862741	0.90[EUR][1000 genomes]
rs67541414	0.88[EUR][1000 genomes]
rs6762811	0.88[EUR][1000 genomes]
rs6763800	0.88[EUR][1000 genomes]
rs6765618	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6766385	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes]
rs6769104	0.96[CEU][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes]
rs6769428	0.90[EUR][1000 genomes]
rs6769727	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6772988	1.00[CEU][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes]
rs6777409	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6779596	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6780873	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6781680	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6783977	0.92[EUR][1000 genomes]
rs6784364	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[EUR][1000 genomes]
rs6784589	0.90[EUR][1000 genomes]
rs6785482	0.89[EUR][1000 genomes]
rs6790077	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6802557	0.88[EUR][1000 genomes]
rs6806203	0.81[EUR][1000 genomes]
rs6806790	0.88[EUR][1000 genomes]
rs6807579	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6809755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs722476	0.86[CEU][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes]
rs7355836	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431086	0.85[EUR][1000 genomes]
rs7432176	0.89[EUR][1000 genomes]
rs7610102	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7610327	0.88[EUR][1000 genomes]
rs7612587	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[EUR][1000 genomes]
rs7612592	1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[EUR][1000 genomes]
rs7614115	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7616677	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs7616958	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7618059	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7619540	1.00[CEU][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7621830	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7622500	0.87[EUR][1000 genomes]
rs7622922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7627557	0.87[EUR][1000 genomes]
rs7628516	0.89[EUR][1000 genomes]
rs7629394	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7630419	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes]
rs7631399	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7632798	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7634359	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7634759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635133	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7636229	0.87[EUR][1000 genomes]
rs7638912	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7646962	0.89[EUR][1000 genomes]
rs7649160	0.86[EUR][1000 genomes]
rs7653081	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9290402	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9290403	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9290407	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs939443	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs939444	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs941311	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9681493	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9682313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9754948	0.89[EUR][1000 genomes]
rs9812471	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[EUR][1000 genomes]
rs9812849	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[EUR][1000 genomes]
rs9813887	1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[EUR][1000 genomes]
rs9813945	0.88[EUR][1000 genomes]
rs9818337	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs9819957	0.93[EUR][1000 genomes]
rs9821273	0.94[EUR][1000 genomes]
rs9822318	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[EUR][1000 genomes]
rs9822356	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs9828605	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9828817	0.92[EUR][1000 genomes]
rs9832452	0.89[EUR][1000 genomes]
rs9832573	0.89[EUR][1000 genomes]
rs9832848	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs9832890	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes]
rs9834710	0.92[EUR][1000 genomes]
rs9835989	0.91[EUR][1000 genomes]
rs9839820	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9840480	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9845216	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs9849685	0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9849770	0.86[EUR][1000 genomes]
rs9851091	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9851395	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9852199	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9852542	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9852574	0.89[EUR][1000 genomes]
rs9852617	1.00[CEU][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9852782	1.00[CEU][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9857389	0.89[EUR][1000 genomes]
rs9857723	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes]
rs9860228	0.88[EUR][1000 genomes]
rs9861229	0.88[EUR][1000 genomes]
rs9861403	0.88[EUR][1000 genomes]
rs9861774	0.89[EUR][1000 genomes]
rs9861976	0.86[EUR][1000 genomes]
rs9864932	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9865059	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9865178	0.94[EUR][1000 genomes]
rs9865244	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9869697	0.88[EUR][1000 genomes]
rs9875156	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs9875181	0.88[EUR][1000 genomes]
rs9876418	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9876498	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9877151	0.88[EUR][1000 genomes]
rs9877181	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9877228	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs9880120	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9881145	1.00[CEU][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9882920	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3463443	chr3:101251356-101254118	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3463441	chr3:101251374-101254124	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3463444	chr3:101251401-101254079	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3463445	chr3:101251401-101254079	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv10386	chr3:101251512-101253932	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs954994	SENP7	Cis_1M	lymphoblastoid	RTeQTL
rs954994	SENP7	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101249600-101254000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:101250200-101253200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:101251600-101253600	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:101251800-101253200	Enhancers	Colon Smooth Muscle	Colon
5	chr3:101251800-101253600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:101251800-101260800	Weak transcription	Primary T cells from cord blood	blood
7	chr3:101252000-101253200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:101252000-101253400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:101252200-101253200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:101252200-101254800	Weak transcription	Placenta	Placenta
11	chr3:101252400-101254200	Enhancers	K562	blood
12	chr3:101252800-101253600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:101252800-101254800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:101253000-101253200	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

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