Variant report

Variant	rs4333067
Chromosome Location	chr3:101259208-101259209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10048967	0.82[EUR][1000 genomes]
rs11923667	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11923990	0.83[EUR][1000 genomes]
rs12487776	0.83[EUR][1000 genomes]
rs12489987	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12490635	0.83[EUR][1000 genomes]
rs12493306	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12494650	0.83[EUR][1000 genomes]
rs12494688	0.83[EUR][1000 genomes]
rs12496159	0.81[EUR][1000 genomes]
rs12496243	0.83[EUR][1000 genomes]
rs12630944	0.82[EUR][1000 genomes]
rs13317043	0.81[EUR][1000 genomes]
rs1527548	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1547583	0.83[EUR][1000 genomes]
rs1590009	0.82[EUR][1000 genomes]
rs1609157	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1609158	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16843947	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1830233	0.82[EUR][1000 genomes]
rs1918407	0.83[EUR][1000 genomes]
rs2015153	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2114300	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2141181	0.81[EUR][1000 genomes]
rs2162303	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2162304	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2178037	0.81[EUR][1000 genomes]
rs2317703	0.81[EUR][1000 genomes]
rs2317704	0.83[EUR][1000 genomes]
rs2317705	0.83[EUR][1000 genomes]
rs2317706	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28431102	0.83[AMR][1000 genomes]
rs28496953	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2873540	0.83[EUR][1000 genomes]
rs28786444	0.82[EUR][1000 genomes]
rs3846087	0.83[EUR][1000 genomes]
rs3846088	0.83[EUR][1000 genomes]
rs3856771	0.83[EUR][1000 genomes]
rs3932406	0.83[EUR][1000 genomes]
rs4234489	0.82[EUR][1000 genomes]
rs4234490	0.83[EUR][1000 genomes]
rs4350900	0.83[EUR][1000 genomes]
rs4479567	0.83[EUR][1000 genomes]
rs4525837	0.82[EUR][1000 genomes]
rs4527355	0.82[EUR][1000 genomes]
rs4536800	0.83[EUR][1000 genomes]
rs4553954	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4683848	0.83[EUR][1000 genomes]
rs4683849	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4683905	0.80[EUR][1000 genomes]
rs4683910	0.81[EUR][1000 genomes]
rs4683911	0.81[EUR][1000 genomes]
rs4683919	0.82[EUR][1000 genomes]
rs4683921	0.82[EUR][1000 genomes]
rs4683924	0.83[EUR][1000 genomes]
rs4683928	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55774498	0.81[EUR][1000 genomes]
rs55798976	0.82[EUR][1000 genomes]
rs55889649	0.81[EUR][1000 genomes]
rs56290975	0.83[EUR][1000 genomes]
rs56389316	0.82[EUR][1000 genomes]
rs57215339	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57312142	0.82[EUR][1000 genomes]
rs58415479	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59085990	0.81[EUR][1000 genomes]
rs59345491	0.82[EUR][1000 genomes]
rs59812872	0.83[EUR][1000 genomes]
rs6441609	0.82[EUR][1000 genomes]
rs66480882	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6769727	0.82[EUR][1000 genomes]
rs6779596	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6780873	0.82[EUR][1000 genomes]
rs6781680	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6790077	0.82[EUR][1000 genomes]
rs6807579	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6809755	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7355836	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7610102	0.93[AMR][1000 genomes]
rs7612587	0.81[EUR][1000 genomes]
rs7616958	0.82[EUR][1000 genomes]
rs7618059	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7619540	0.81[EUR][1000 genomes]
rs7621830	0.83[EUR][1000 genomes]
rs7622922	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7629394	0.82[EUR][1000 genomes]
rs7631399	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7632798	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7634359	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7634759	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7635133	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7638912	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7653081	0.82[EUR][1000 genomes]
rs9290402	0.83[EUR][1000 genomes]
rs9290403	0.83[EUR][1000 genomes]
rs9290407	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs941311	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs954994	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9637416	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9681493	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9682313	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9812471	0.81[EUR][1000 genomes]
rs9812849	0.81[EUR][1000 genomes]
rs9819957	0.80[EUR][1000 genomes]
rs9821273	0.81[EUR][1000 genomes]
rs9828605	0.82[EUR][1000 genomes]
rs9839820	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9840480	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9849685	0.83[EUR][1000 genomes]
rs9851091	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9851395	0.82[EUR][1000 genomes]
rs9852199	0.82[EUR][1000 genomes]
rs9852542	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9852617	0.83[EUR][1000 genomes]
rs9852782	0.83[EUR][1000 genomes]
rs9864932	0.82[EUR][1000 genomes]
rs9865059	0.81[EUR][1000 genomes]
rs9865178	0.81[EUR][1000 genomes]
rs9865244	0.80[EUR][1000 genomes]
rs9876418	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9876498	0.81[EUR][1000 genomes]
rs9877181	0.81[EUR][1000 genomes]
rs9880120	0.82[EUR][1000 genomes]
rs9881145	0.83[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4333067	SENP7	Cis_1M	lymphoblastoid	RTeQTL
rs4333067	SENP7	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101251800-101260800	Weak transcription	Primary T cells from cord blood	blood
2	chr3:101259200-101259400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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