Variant report

Variant	rs9682313
Chromosome Location	chr3:101231921-101231922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:101230038..101233245-chr3:101289410..101293829,6	MCF-7	breast:
2	chr12:69079643..69080620-chr3:101231883..101232498,2	Hela-S3	cervix:
3	chr3:101227907..101233845-chr3:101279162..101282528,7	K562	blood:
4	chr3:101231583..101232129-chr6:26123800..26124666,2	Hela-S3	cervix:
5	chr3:101230402..101234052-chr3:101279198..101281668,4	MCF-7	breast:
6	chr3:101229711..101231940-chr3:101430823..101433136,2	MCF-7	breast:
7	chr3:101218206..101221093-chr3:101229989..101232899,2	K562	blood:
8	chr3:101230224..101236227-chr3:101287209..101294479,8	K562	blood:
9	chr3:101230728..101233883-chr3:101278974..101284573,9	K562	blood:
10	chr3:101230669..101232356-chr3:101291492..101293831,2	K562	blood:
11	chr3:101231111..101234614-chr3:101289997..101293015,3	MCF-7	breast:
12	chr3:101230849..101233944-chr3:101235789..101239028,3	MCF-7	breast:
13	chr3:100118496..100120943-chr3:101229402..101232050,2	K562	blood:
14	chr17:56707800..56709501-chr3:101229613..101232436,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction
ENSG00000247363	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000154174	Chromatin interaction
ENSG00000175841	Chromatin interaction
ENSG00000206535	Chromatin interaction
ENSG00000244119	Chromatin interaction
ENSG00000174173	Chromatin interaction
ENSG00000111581	Chromatin interaction
ENSG00000081154	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000238525	Chromatin interaction

Extended variants
information (count: 290 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:290)

rs_ID	r²[population]
rs10048967	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10804836	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs10804837	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs10936594	0.92[EUR][1000 genomes]
rs10936606	0.93[EUR][1000 genomes]
rs10936608	0.93[EUR][1000 genomes]
rs10936609	0.93[EUR][1000 genomes]
rs10936621	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.95[EUR][1000 genomes]
rs10936623	0.85[EUR][1000 genomes]
rs10936624	0.95[EUR][1000 genomes]
rs10936628	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.96[EUR][1000 genomes]
rs10936629	0.96[EUR][1000 genomes]
rs10936630	0.96[EUR][1000 genomes]
rs10936631	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.96[EUR][1000 genomes]
rs10936645	0.90[EUR][1000 genomes]
rs11710011	0.93[EUR][1000 genomes]
rs11923667	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11923990	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11926358	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12487776	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12489987	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12490635	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12492764	0.83[EUR][1000 genomes]
rs12493306	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12493707	0.92[EUR][1000 genomes]
rs12494650	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12494688	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12496159	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs12496243	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12497154	0.83[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs12497642	0.92[EUR][1000 genomes]
rs12630944	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13314150	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs13315363	0.95[EUR][1000 genomes]
rs13317043	1.00[CEU][hapmap];0.90[YRI][hapmap];0.97[EUR][1000 genomes]
rs13318385	0.93[EUR][1000 genomes]
rs13324180	0.95[EUR][1000 genomes]
rs13324252	0.90[EUR][1000 genomes]
rs13326777	0.88[EUR][1000 genomes]
rs13440	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs1402254	0.92[EUR][1000 genomes]
rs1402255	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs1520653	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs1520656	0.89[EUR][1000 genomes]
rs1527548	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1547583	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1590009	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1609157	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1609158	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16843947	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17344542	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs1830233	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1915310	1.00[CEU][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes]
rs1915311	0.93[EUR][1000 genomes]
rs1918407	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1996691	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2015153	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2049106	0.93[EUR][1000 genomes]
rs2049107	0.93[EUR][1000 genomes]
rs2049108	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs2062318	0.91[EUR][1000 genomes]
rs2068494	0.91[EUR][1000 genomes]
rs2114300	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2141181	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs2162303	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2162304	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2178037	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs2271975	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2317688	0.91[EUR][1000 genomes]
rs2317689	0.91[EUR][1000 genomes]
rs2317698	0.94[EUR][1000 genomes]
rs2317701	0.95[EUR][1000 genomes]
rs2317702	1.00[CEU][hapmap];0.91[YRI][hapmap];0.95[EUR][1000 genomes]
rs2317703	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs2317704	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2317705	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2317706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2317743	0.91[EUR][1000 genomes]
rs2317744	0.92[EUR][1000 genomes]
rs2317747	0.91[EUR][1000 genomes]
rs2317750	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs2553419	0.89[CHD][hapmap];0.84[GIH][hapmap];0.86[MEX][hapmap]
rs28431102	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28496953	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2873540	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2873547	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs28786444	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs28790912	0.94[EUR][1000 genomes]
rs28883302	0.92[EUR][1000 genomes]
rs34407049	0.94[EUR][1000 genomes]
rs34423488	0.94[EUR][1000 genomes]
rs35669002	0.94[EUR][1000 genomes]
rs35810131	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3817409	0.91[EUR][1000 genomes]
rs3846085	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes]
rs3846086	0.91[EUR][1000 genomes]
rs3846087	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3846088	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.81[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3846090	0.92[EUR][1000 genomes]
rs3856771	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3932406	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4083062	0.91[EUR][1000 genomes]
rs4234486	0.91[EUR][1000 genomes]
rs4234487	0.91[EUR][1000 genomes]
rs4234489	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4234490	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4264710	0.86[EUR][1000 genomes]
rs4333067	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4334622	0.91[EUR][1000 genomes]
rs4350900	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4383493	0.92[EUR][1000 genomes]
rs4476480	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[EUR][1000 genomes]
rs4479566	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs4479567	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4482646	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.94[EUR][1000 genomes]
rs4508750	0.94[EUR][1000 genomes]
rs4510364	0.93[EUR][1000 genomes]
rs4518101	0.90[EUR][1000 genomes]
rs4525837	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4527355	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4536800	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4553954	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593004	0.90[EUR][1000 genomes]
rs4683841	0.91[EUR][1000 genomes]
rs4683842	1.00[CEU][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes]
rs4683843	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs4683845	0.96[EUR][1000 genomes]
rs4683846	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4683848	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4683849	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683891	0.91[EUR][1000 genomes]
rs4683892	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs4683893	0.92[EUR][1000 genomes]
rs4683894	0.93[EUR][1000 genomes]
rs4683896	0.93[EUR][1000 genomes]
rs4683897	0.93[EUR][1000 genomes]
rs4683898	0.94[EUR][1000 genomes]
rs4683901	0.96[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs4683905	0.97[EUR][1000 genomes]
rs4683906	0.92[EUR][1000 genomes]
rs4683907	0.92[EUR][1000 genomes]
rs4683910	0.96[CEU][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs4683911	0.97[EUR][1000 genomes]
rs4683916	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4683919	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4683920	0.95[EUR][1000 genomes]
rs4683921	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4683924	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4683928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5009801	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes]
rs55721154	0.91[EUR][1000 genomes]
rs55774498	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55798976	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55889649	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55972805	0.94[EUR][1000 genomes]
rs56230566	0.92[EUR][1000 genomes]
rs56290975	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56389316	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs56849605	0.92[EUR][1000 genomes]
rs57215339	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57312142	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57412969	0.91[EUR][1000 genomes]
rs57511276	0.92[EUR][1000 genomes]
rs58415479	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59085990	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs59345491	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59812872	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6441597	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6441598	0.91[EUR][1000 genomes]
rs6441609	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66480882	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66516412	0.94[EUR][1000 genomes]
rs66715000	0.95[EUR][1000 genomes]
rs66758920	0.95[EUR][1000 genomes]
rs66862741	0.94[EUR][1000 genomes]
rs67541414	0.92[EUR][1000 genomes]
rs6762811	0.91[EUR][1000 genomes]
rs6763800	0.92[EUR][1000 genomes]
rs6765618	0.83[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs6766385	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs6769104	0.95[CEU][hapmap];0.90[YRI][hapmap];0.93[EUR][1000 genomes]
rs6769428	0.94[EUR][1000 genomes]
rs6769727	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6772988	1.00[CEU][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes]
rs6777409	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6779596	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6780873	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6781680	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6783977	0.96[EUR][1000 genomes]
rs6784364	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs6784589	0.94[EUR][1000 genomes]
rs6785482	0.93[EUR][1000 genomes]
rs6790077	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6802557	0.92[EUR][1000 genomes]
rs6806203	0.85[EUR][1000 genomes]
rs6806790	0.92[EUR][1000 genomes]
rs6807579	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6809755	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs722476	0.85[CEU][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs7355836	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7431086	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs7432176	0.93[EUR][1000 genomes]
rs7610102	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7610327	0.92[EUR][1000 genomes]
rs7612587	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs7612592	1.00[CEU][hapmap];0.91[YRI][hapmap];0.96[EUR][1000 genomes]
rs7614115	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7616677	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs7616958	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7618059	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7619540	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7621830	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7622500	0.90[EUR][1000 genomes]
rs7622922	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7627557	0.90[EUR][1000 genomes]
rs7628516	0.93[EUR][1000 genomes]
rs7629394	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7630419	0.88[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs7631399	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7632798	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7634359	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7634759	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7635133	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7636229	0.90[EUR][1000 genomes]
rs7638912	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7646962	0.93[EUR][1000 genomes]
rs7649160	0.90[EUR][1000 genomes]
rs7653081	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9290402	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9290403	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9290407	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs939443	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs939444	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs941311	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs954994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9637416	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9681493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9754948	0.93[EUR][1000 genomes]
rs9755773	0.83[EUR][1000 genomes]
rs9812471	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs9812849	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes]
rs9813887	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[EUR][1000 genomes]
rs9813945	0.91[EUR][1000 genomes]
rs9818337	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs9819957	0.97[EUR][1000 genomes]
rs9821273	0.97[EUR][1000 genomes]
rs9822318	1.00[CEU][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs9822356	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs9828605	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9828817	0.95[EUR][1000 genomes]
rs9832452	0.93[EUR][1000 genomes]
rs9832573	0.93[EUR][1000 genomes]
rs9832848	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs9832890	1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs9834710	0.95[EUR][1000 genomes]
rs9835989	0.95[EUR][1000 genomes]
rs9839820	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9840480	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9845216	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs9849685	0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9849770	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs9851091	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9851395	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9852199	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9852542	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9852574	0.93[EUR][1000 genomes]
rs9852617	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9852782	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9857389	0.93[EUR][1000 genomes]
rs9857723	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes]
rs9860228	0.92[EUR][1000 genomes]
rs9861229	0.92[EUR][1000 genomes]
rs9861403	0.92[EUR][1000 genomes]
rs9861774	0.93[EUR][1000 genomes]
rs9861976	0.89[EUR][1000 genomes]
rs9864932	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9865059	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9865178	0.97[EUR][1000 genomes]
rs9865244	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9869697	0.92[EUR][1000 genomes]
rs9875156	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs9875181	0.92[EUR][1000 genomes]
rs9876418	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9876498	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9877151	0.92[EUR][1000 genomes]
rs9877181	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9877228	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.82[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs9880120	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9881145	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9882920	0.93[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9682313	SENP7	Cis_1M	lymphoblastoid	RTeQTL
rs9682313	FAM55C	cis	lymphoblastoid	seeQTL
rs9682313	SENP7	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101230000-101232400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:101230200-101232400	Active TSS	HMEC	breast
3	chr3:101230200-101232800	Active TSS	Rectal Smooth Muscle	rectum
4	chr3:101230200-101233000	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr3:101230400-101232600	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr3:101230400-101232800	Active TSS	Fetal Brain Female	brain
7	chr3:101230400-101233000	Active TSS	Brain Germinal Matrix	brain
8	chr3:101230400-101233200	Active TSS	Stomach Smooth Muscle	stomach
9	chr3:101230600-101232400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:101230600-101232400	Active TSS	Primary T cells from cord blood	blood
11	chr3:101230600-101232600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:101230600-101232600	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr3:101230600-101232600	Active TSS	Duodenum Mucosa	Duodenum
14	chr3:101230600-101232600	Active TSS	K562	blood
15	chr3:101230800-101232200	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr3:101230800-101232400	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr3:101230800-101232400	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr3:101230800-101232400	Active TSS	Muscle Satellite Cultured Cells	--
19	chr3:101230800-101232400	Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr3:101230800-101232400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:101230800-101232400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:101230800-101232400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:101230800-101232400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:101230800-101232400	Active TSS	Small Intestine	intestine
25	chr3:101230800-101232400	Active TSS	Hela-S3	cervix
26	chr3:101230800-101232600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:101230800-101232600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:101230800-101232600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:101230800-101232600	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr3:101230800-101232600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:101230800-101232600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:101230800-101232600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:101230800-101232600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:101230800-101232600	Active TSS	Fetal Intestine Large	intestine
35	chr3:101230800-101232600	Active TSS	Fetal Intestine Small	intestine
36	chr3:101230800-101232600	Active TSS	Fetal Kidney	kidney
37	chr3:101230800-101232600	Active TSS	Fetal Muscle Trunk	muscle
38	chr3:101230800-101232600	Active TSS	Fetal Muscle Leg	muscle
39	chr3:101230800-101232600	Active TSS	Placenta	Placenta
40	chr3:101230800-101232600	Active TSS	A549	lung
41	chr3:101230800-101232600	Active TSS	NHEK	skin
42	chr3:101230800-101232800	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr3:101230800-101232800	Active TSS	Colonic Mucosa	Colon
44	chr3:101230800-101232800	Active TSS	Fetal Stomach	stomach
45	chr3:101230800-101232800	Active TSS	HSMMtube	muscle
46	chr3:101230800-101233000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr3:101230800-101233000	Active TSS	HSMM	muscle
48	chr3:101231000-101232200	Active TSS	H1 Cell Line	embryonic stem cell
49	chr3:101231000-101232400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr3:101231000-101232400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Variant report

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