Variant report

Variant	rs4683849
Chromosome Location	chr3:101237307-101237308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:108)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:108 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:101237208-101237589	MCF10A-Er-Src	breast:	n/a	chr3:101237453-101237464
2	USF2	chr3:101237287-101237640	Hela-S3	cervix:	n/a	n/a
3	RCOR1	chr3:101236951-101237634	GM12878	blood:	n/a	n/a
4	POLR2A	chr3:101237149-101237899	GM12892	blood:	n/a	n/a
5	YY1	chr3:101237268-101237547	K562	blood:	n/a	n/a
6	POLR2A	chr3:101237233-101237822	GM12891	blood:	n/a	n/a
7	SETDB1	chr3:101237193-101237513	U2OS	brain:	n/a	n/a
8	NFATC1	chr3:101237139-101237735	GM12878	blood:	n/a	n/a
9	FOXM1	chr3:101237074-101237954	GM12878	blood:	n/a	n/a
10	IRF4	chr3:101237074-101237774	GM12878	blood:	n/a	n/a
11	YY1	chr3:101237197-101237999	GM12878	blood:	n/a	n/a
12	POU2F2	chr3:101237209-101237781	GM12891	blood:	n/a	n/a
13	EP300	chr3:101236961-101237655	GM12878	blood:	n/a	n/a
14	MTA3	chr3:101237050-101238120	GM12878	blood:	n/a	n/a
15	RELA	chr3:101237192-101237807	GM19099	blood:	n/a	n/a
16	IRF1	chr3:101237024-101237330	K562	blood:	n/a	n/a
17	FOS	chr3:101237211-101237633	MCF10A-Er-Src	breast:	n/a	chr3:101237453-101237464
18	YY1	chr3:101237163-101237850	K562	blood:	n/a	n/a
19	CEBPB	chr3:101237225-101237510	GM12878	blood:	n/a	n/a
20	RCOR1	chr3:101237121-101237519	K562	blood:	n/a	n/a
21	TCF3	chr3:101237107-101237611	GM12878	blood:	n/a	n/a
22	STAT5A	chr3:101237191-101237774	GM12878	blood:	n/a	n/a
23	YY1	chr3:101237196-101237967	GM12892	blood:	n/a	n/a
24	POLR2A	chr3:101237249-101237524	MCF10A-Er-Src	breast:	n/a	n/a
25	YY1	chr3:101237265-101237792	GM12891	blood:	n/a	n/a
26	TAF1	chr3:101237223-101237515	Hela-S3	cervix:	n/a	n/a
27	SPI1	chr3:101237191-101237751	GM12891	blood:	n/a	n/a
28	YY1	chr3:101237215-101238002	GM12891	blood:	n/a	n/a
29	BCLAF1	chr3:101237062-101237729	GM12878	blood:	n/a	n/a
30	FOS	chr3:101237231-101237607	MCF10A-Er-Src	breast:	n/a	chr3:101237453-101237464
31	CBX3	chr3:101237218-101237724	K562	blood:	n/a	n/a
32	TCF12	chr3:101237192-101237558	GM12878	blood:	n/a	n/a
33	UBTF	chr3:101237228-101237423	K562	blood:	n/a	n/a
34	EBF1	chr3:101237223-101237784	GM12878	blood:	n/a	n/a
35	RUNX3	chr3:101237131-101237951	GM12878	blood:	n/a	n/a
36	POLR2A	chr3:101237216-101237785	GM12878	blood:	n/a	n/a
37	WRNIP1	chr3:101237301-101237793	GM12878	blood:	n/a	n/a
38	TCF3	chr3:101237194-101237558	GM12878	blood:	n/a	n/a
39	POU2F2	chr3:101237196-101237650	GM12891	blood:	n/a	n/a
40	POLR2A	chr3:101237155-101237886	GM12892	blood:	n/a	n/a
41	SP1	chr3:101237119-101237708	GM12878	blood:	n/a	n/a
42	TBP	chr3:101237264-101237540	Hela-S3	cervix:	n/a	n/a
43	FOS	chr3:101237220-101237593	MCF10A-Er-Src	breast:	n/a	chr3:101237453-101237464
44	POLR2A	chr3:101237299-101237639	Hela-S3	cervix:	n/a	n/a
45	BCL11A	chr3:101237220-101237530	GM12878	blood:	n/a	n/a
46	POLR2A	chr3:101237270-101237750	GM12891	blood:	n/a	n/a
47	PAX5	chr3:101237230-101237605	GM12878	blood:	n/a	n/a
48	BCLAF1	chr3:101237199-101237715	GM12878	blood:	n/a	n/a
49	FOXM1	chr3:101237145-101237943	GM12878	blood:	n/a	n/a
50	PAX5	chr3:101237254-101237671	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:101230849..101233944-chr3:101235789..101239028,3	MCF-7	breast:
2	chr3:101235055..101237948-chr3:101291499..101293284,2	MCF-7	breast:
3	chr3:101235226..101237848-chr3:101277796..101281104,3	MCF-7	breast:

No data

Variant related genes	Relation type
FAM172BP	TF binding region
ENSG00000138468	Chromatin interaction
ENSG00000174173	Chromatin interaction
ENSG00000081154	Chromatin interaction

Extended variants
information (count: 289 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:289)

rs_ID	r²[population]
rs10048967	0.98[EUR][1000 genomes]
rs10804836	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs10804837	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs10936594	0.92[EUR][1000 genomes]
rs10936606	0.93[EUR][1000 genomes]
rs10936608	0.93[EUR][1000 genomes]
rs10936609	0.93[EUR][1000 genomes]
rs10936621	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs10936623	0.85[EUR][1000 genomes]
rs10936624	0.95[EUR][1000 genomes]
rs10936628	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs10936629	0.96[EUR][1000 genomes]
rs10936630	0.96[EUR][1000 genomes]
rs10936631	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs10936645	0.90[EUR][1000 genomes]
rs11710011	0.93[EUR][1000 genomes]
rs11923667	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11923990	0.99[EUR][1000 genomes]
rs11926358	0.97[EUR][1000 genomes]
rs12487776	0.99[EUR][1000 genomes]
rs12489987	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12490635	0.99[EUR][1000 genomes]
rs12492764	0.83[EUR][1000 genomes]
rs12493306	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12493707	0.92[EUR][1000 genomes]
rs12494650	0.99[EUR][1000 genomes]
rs12494688	0.99[EUR][1000 genomes]
rs12496159	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs12496243	0.99[EUR][1000 genomes]
rs12497154	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs12497642	0.92[EUR][1000 genomes]
rs12630944	0.98[EUR][1000 genomes]
rs13314150	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs13315363	0.95[EUR][1000 genomes]
rs13317043	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs13318385	0.93[EUR][1000 genomes]
rs13324180	0.95[EUR][1000 genomes]
rs13324252	0.90[EUR][1000 genomes]
rs13326777	0.88[EUR][1000 genomes]
rs13440	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs1402254	0.92[EUR][1000 genomes]
rs1402255	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs1520653	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs1520656	0.89[EUR][1000 genomes]
rs1527548	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1547583	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1590009	0.98[EUR][1000 genomes]
rs1609157	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1609158	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16843947	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17344542	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs1830233	0.98[EUR][1000 genomes]
rs1915310	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs1915311	0.93[EUR][1000 genomes]
rs1918407	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs1996691	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2015153	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2049106	0.93[EUR][1000 genomes]
rs2049107	0.93[EUR][1000 genomes]
rs2049108	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2062318	0.91[EUR][1000 genomes]
rs2068494	0.91[EUR][1000 genomes]
rs2114300	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2141181	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs2162303	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2162304	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2178037	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs2271975	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2317688	0.91[EUR][1000 genomes]
rs2317689	0.91[EUR][1000 genomes]
rs2317698	0.94[EUR][1000 genomes]
rs2317701	0.95[EUR][1000 genomes]
rs2317702	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs2317703	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs2317704	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs2317705	0.99[EUR][1000 genomes]
rs2317706	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2317743	0.91[EUR][1000 genomes]
rs2317744	0.92[EUR][1000 genomes]
rs2317747	0.91[EUR][1000 genomes]
rs2317750	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs28431102	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28496953	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2873540	0.99[EUR][1000 genomes]
rs2873547	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs28786444	0.97[EUR][1000 genomes]
rs28790912	0.94[EUR][1000 genomes]
rs28883302	0.92[EUR][1000 genomes]
rs34407049	0.94[EUR][1000 genomes]
rs34423488	0.94[EUR][1000 genomes]
rs35669002	0.94[EUR][1000 genomes]
rs35810131	0.97[EUR][1000 genomes]
rs3817409	0.91[EUR][1000 genomes]
rs3846085	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs3846086	0.91[EUR][1000 genomes]
rs3846087	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs3846088	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs3846090	0.92[EUR][1000 genomes]
rs3856771	0.99[EUR][1000 genomes]
rs3932406	0.99[EUR][1000 genomes]
rs4083062	0.91[EUR][1000 genomes]
rs4234486	0.91[EUR][1000 genomes]
rs4234487	0.91[EUR][1000 genomes]
rs4234489	0.98[EUR][1000 genomes]
rs4234490	0.99[EUR][1000 genomes]
rs4264710	0.86[EUR][1000 genomes]
rs4333067	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4334622	0.91[EUR][1000 genomes]
rs4350900	0.99[EUR][1000 genomes]
rs4383493	0.92[EUR][1000 genomes]
rs4476480	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4479566	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs4479567	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs4482646	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs4508750	0.94[EUR][1000 genomes]
rs4510364	0.93[EUR][1000 genomes]
rs4518101	0.90[EUR][1000 genomes]
rs4525837	0.98[EUR][1000 genomes]
rs4527355	0.98[EUR][1000 genomes]
rs4536800	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs4553954	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4593004	0.90[EUR][1000 genomes]
rs4683841	0.91[EUR][1000 genomes]
rs4683842	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4683843	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs4683845	0.96[EUR][1000 genomes]
rs4683846	0.96[EUR][1000 genomes]
rs4683848	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs4683891	0.91[EUR][1000 genomes]
rs4683892	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4683893	0.92[EUR][1000 genomes]
rs4683894	0.93[EUR][1000 genomes]
rs4683896	0.93[EUR][1000 genomes]
rs4683897	0.93[EUR][1000 genomes]
rs4683898	0.94[EUR][1000 genomes]
rs4683901	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs4683905	0.97[EUR][1000 genomes]
rs4683906	0.92[EUR][1000 genomes]
rs4683907	0.92[EUR][1000 genomes]
rs4683910	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4683911	0.97[EUR][1000 genomes]
rs4683916	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4683919	0.98[EUR][1000 genomes]
rs4683920	0.95[EUR][1000 genomes]
rs4683921	0.98[EUR][1000 genomes]
rs4683924	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs4683928	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5009801	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs55721154	0.91[EUR][1000 genomes]
rs55774498	0.98[EUR][1000 genomes]
rs55798976	0.99[EUR][1000 genomes]
rs55889649	0.97[EUR][1000 genomes]
rs55972805	0.94[EUR][1000 genomes]
rs56230566	0.92[EUR][1000 genomes]
rs56290975	0.99[EUR][1000 genomes]
rs56389316	0.98[EUR][1000 genomes]
rs56849605	0.92[EUR][1000 genomes]
rs57215339	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57312142	0.98[EUR][1000 genomes]
rs57412969	0.91[EUR][1000 genomes]
rs57511276	0.92[EUR][1000 genomes]
rs58415479	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59085990	0.97[EUR][1000 genomes]
rs59345491	0.98[EUR][1000 genomes]
rs59812872	0.99[EUR][1000 genomes]
rs6441597	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6441598	0.91[EUR][1000 genomes]
rs6441609	0.98[EUR][1000 genomes]
rs66480882	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66516412	0.94[EUR][1000 genomes]
rs66715000	0.95[EUR][1000 genomes]
rs66758920	0.95[EUR][1000 genomes]
rs66862741	0.94[EUR][1000 genomes]
rs67541414	0.92[EUR][1000 genomes]
rs6762811	0.91[EUR][1000 genomes]
rs6763800	0.92[EUR][1000 genomes]
rs6765618	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs6766385	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs6769104	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs6769428	0.94[EUR][1000 genomes]
rs6769727	0.98[EUR][1000 genomes]
rs6772988	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6777409	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6779596	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6780873	0.98[EUR][1000 genomes]
rs6781680	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6783977	0.96[EUR][1000 genomes]
rs6784364	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs6784589	0.94[EUR][1000 genomes]
rs6785482	0.93[EUR][1000 genomes]
rs6790077	0.98[EUR][1000 genomes]
rs6802557	0.92[EUR][1000 genomes]
rs6806203	0.85[EUR][1000 genomes]
rs6806790	0.92[EUR][1000 genomes]
rs6807579	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6809755	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs722476	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs7355836	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7431086	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7432176	0.93[EUR][1000 genomes]
rs7610102	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7610327	0.92[EUR][1000 genomes]
rs7612587	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs7612592	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs7614115	0.97[EUR][1000 genomes]
rs7616677	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7616958	0.98[EUR][1000 genomes]
rs7618059	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7619540	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs7621830	0.99[EUR][1000 genomes]
rs7622500	0.90[EUR][1000 genomes]
rs7622922	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7627557	0.90[EUR][1000 genomes]
rs7628516	0.93[EUR][1000 genomes]
rs7629394	0.98[EUR][1000 genomes]
rs7630419	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs7631399	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632798	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7634359	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7634759	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7635133	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636229	0.90[EUR][1000 genomes]
rs7638912	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7646962	0.93[EUR][1000 genomes]
rs7649160	0.90[EUR][1000 genomes]
rs7653081	0.98[EUR][1000 genomes]
rs9290402	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs9290403	0.99[EUR][1000 genomes]
rs9290407	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs939443	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs939444	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs941311	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs954994	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9637416	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9681493	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9682313	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9754948	0.93[EUR][1000 genomes]
rs9755773	0.83[EUR][1000 genomes]
rs9812471	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs9812849	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs9813887	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs9813945	0.91[EUR][1000 genomes]
rs9818337	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs9819957	0.97[EUR][1000 genomes]
rs9821273	0.97[EUR][1000 genomes]
rs9822318	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs9822356	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs9828605	0.98[EUR][1000 genomes]
rs9828817	0.95[EUR][1000 genomes]
rs9832452	0.93[EUR][1000 genomes]
rs9832573	0.93[EUR][1000 genomes]
rs9832848	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs9832890	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs9834710	0.95[EUR][1000 genomes]
rs9835989	0.95[EUR][1000 genomes]
rs9839820	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9840480	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9845216	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs9849685	0.99[EUR][1000 genomes]
rs9849770	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs9851091	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9851395	0.98[EUR][1000 genomes]
rs9852199	0.98[EUR][1000 genomes]
rs9852542	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9852574	0.93[EUR][1000 genomes]
rs9852617	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs9852782	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs9857389	0.93[EUR][1000 genomes]
rs9857723	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs9860228	0.92[EUR][1000 genomes]
rs9861229	0.92[EUR][1000 genomes]
rs9861403	0.92[EUR][1000 genomes]
rs9861774	0.93[EUR][1000 genomes]
rs9861976	0.89[EUR][1000 genomes]
rs9864932	0.98[EUR][1000 genomes]
rs9865059	0.98[EUR][1000 genomes]
rs9865178	0.97[EUR][1000 genomes]
rs9865244	0.97[EUR][1000 genomes]
rs9869697	0.92[EUR][1000 genomes]
rs9875156	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs9875181	0.92[EUR][1000 genomes]
rs9876418	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9876498	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs9877151	0.92[EUR][1000 genomes]
rs9877181	0.98[EUR][1000 genomes]
rs9877228	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs9880120	0.99[EUR][1000 genomes]
rs9881145	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs9882920	0.93[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4683849	SENP7	Cis_1M	lymphoblastoid	RTeQTL
rs4683849	SENP7	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101232200-101237400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:101232800-101237400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:101232800-101237400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:101232800-101238200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:101232800-101240200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:101233200-101237400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:101233800-101238800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:101235600-101237400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:101236200-101237600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:101236200-101239600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:101236200-101241200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr3:101236800-101238400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr3:101237000-101237400	Enhancers	Hela-S3	cervix
14	chr3:101237000-101237400	Enhancers	HepG2	liver
15	chr3:101237000-101237600	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr3:101237000-101237600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr3:101237000-101238000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:101237000-101238000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:101237000-101238200	Flanking Active TSS	GM12878-XiMat	blood
20	chr3:101237000-101238200	Enhancers	NHEK	skin
21	chr3:101237000-101240000	Enhancers	HUVEC	blood vessel
22	chr3:101237000-101241200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:101237200-101237600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr3:101237200-101237600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr3:101237200-101237600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:101237200-101237600	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr3:101237200-101237800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:101237200-101237800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:101237200-101237800	Enhancers	HMEC	breast
30	chr3:101237200-101237800	Flanking Active TSS	K562	blood
31	chr3:101237200-101238000	Enhancers	Fetal Thymus	thymus
32	chr3:101237200-101238200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Variant report

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