Variant report

Variant	rs2577776
Chromosome Location	chr2:86133031-86133032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86131881..86134262-chr2:86138041..86140281,2	K562	blood:
2	chr2:86098331..86101203-chr2:86132798..86134488,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-2	chr2:86132673-86133268	NONHSAT072072

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1158729	0.82[EUR][1000 genomes]
rs11678865	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17026728	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2280314	0.85[EUR][1000 genomes]
rs2280315	0.85[EUR][1000 genomes]
rs2438307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3770093	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55656327	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59968392	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs60337023	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6547635	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86120200-86134200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr2:86122000-86134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:86124400-86134000	Weak transcription	Lung	lung
4	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
5	chr2:86128800-86133200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:86128800-86133800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:86129800-86133200	Enhancers	Brain Anterior Caudate	brain
8	chr2:86129800-86133400	Enhancers	Brain Substantia Nigra	brain
9	chr2:86129800-86137800	Weak transcription	NHDF-Ad	bronchial
10	chr2:86129800-86138000	Weak transcription	Fetal Thymus	thymus
11	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:86130000-86134000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr2:86130600-86133600	Enhancers	Brain Angular Gyrus	brain
14	chr2:86130600-86138000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:86131000-86134400	Weak transcription	Right Atrium	heart
16	chr2:86131200-86134000	Weak transcription	K562	blood
17	chr2:86131400-86133200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr2:86131400-86137800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
20	chr2:86131600-86133200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr2:86131600-86135400	Enhancers	Brain Hippocampus Middle	brain
22	chr2:86131800-86133200	Enhancers	Adipose Nuclei	Adipose
23	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr2:86132000-86133200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:86132000-86133200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:86132000-86133200	Enhancers	Fetal Muscle Leg	muscle
27	chr2:86132000-86133200	Enhancers	Pancreas	Pancrea
28	chr2:86132000-86133200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr2:86132000-86133200	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr2:86132000-86133200	Enhancers	Stomach Smooth Muscle	stomach
31	chr2:86132000-86133400	Enhancers	Placenta	Placenta
32	chr2:86132000-86135200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr2:86132200-86133200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:86132200-86133200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr2:86132200-86133200	Enhancers	Ovary	ovary
36	chr2:86132200-86133200	Enhancers	Spleen	Spleen
37	chr2:86132200-86134000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr2:86132400-86133200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:86132400-86133200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr2:86132400-86133200	Enhancers	Brain Cingulate Gyrus	brain
41	chr2:86132400-86133200	Enhancers	Colon Smooth Muscle	Colon
42	chr2:86132400-86133200	Enhancers	HMEC	breast
43	chr2:86132400-86133200	Enhancers	HSMMtube	muscle
44	chr2:86132400-86133200	Enhancers	Osteobl	bone
45	chr2:86132400-86135000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr2:86132600-86133200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr2:86132600-86133400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr2:86132800-86133200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr2:86133000-86133200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr2:86133000-86134200	Weak transcription	A549	lung

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