Variant report

Variant	rs6547635
Chromosome Location	chr2:86091031-86091032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86071813..86074285-chr2:86090183..86092238,2	K562	blood:
2	chr2:86090368..86092205-chr2:86093898..86095605,2	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11678865	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17026701	0.86[AFR][1000 genomes]
rs17026728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280314	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2280315	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2438307	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2577776	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3770093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55656327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57178127	0.86[AFR][1000 genomes]
rs58686314	0.82[AFR][1000 genomes]
rs60337023	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73943777	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:86067000-86099000	Weak transcription	Gastric	stomach
4	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
6	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
7	chr2:86079000-86092000	Weak transcription	Esophagus	oesophagus
8	chr2:86079200-86092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:86079200-86092600	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:86079200-86092800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
12	chr2:86080000-86091600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:86080400-86093000	Weak transcription	HSMMtube	muscle
14	chr2:86080800-86093600	Weak transcription	K562	blood
15	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:86081600-86092600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:86081600-86092800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr2:86081600-86093000	Weak transcription	Colonic Mucosa	Colon
19	chr2:86081600-86095000	Weak transcription	Pancreas	Pancrea
20	chr2:86081600-86099200	Weak transcription	Left Ventricle	heart
21	chr2:86081600-86100600	Weak transcription	NHDF-Ad	bronchial
22	chr2:86081800-86092000	Weak transcription	Fetal Intestine Small	intestine
23	chr2:86081800-86092000	Weak transcription	Small Intestine	intestine
24	chr2:86081800-86093000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr2:86081800-86093000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr2:86081800-86093000	Weak transcription	Stomach Mucosa	stomach
27	chr2:86082000-86094000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr2:86082000-86099000	Weak transcription	Right Ventricle	heart
29	chr2:86083000-86092000	Strong transcription	Fetal Thymus	thymus
30	chr2:86086800-86092000	Weak transcription	Placenta	Placenta
31	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr2:86087200-86091200	Genic enhancers	Primary B cells from peripheral blood	blood
33	chr2:86087400-86093000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr2:86087400-86096800	Weak transcription	NHEK	skin
35	chr2:86087400-86101800	Weak transcription	Fetal Brain Female	brain
36	chr2:86088200-86099000	Weak transcription	Adipose Nuclei	Adipose
37	chr2:86088400-86091600	Weak transcription	Fetal Intestine Large	intestine
38	chr2:86088400-86105400	Weak transcription	Osteobl	bone
39	chr2:86088600-86092000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:86088600-86111600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr2:86089000-86092600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr2:86089000-86102600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr2:86089400-86092000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr2:86089400-86094800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr2:86089600-86091400	Strong transcription	Primary T cells from cord blood	blood
46	chr2:86089800-86092600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr2:86089800-86092600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr2:86089800-86100000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr2:86089800-86106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr2:86089800-86106000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links