Variant report

Variant	rs3770093
Chromosome Location	chr2:86089673-86089674
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86087814..86090796-chr2:86100697..86102670,2	K562	blood:
2	chr2:86088793..86090572-chr2:86178202..86180924,2	MCF-7	breast:
3	chr2:86084824..86090316-chr2:86093337..86098199,7	K562	blood:
4	chr2:86086188..86089689-chr2:86114407..86116983,3	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction
ENSG00000232504	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11674097	0.88[CEU][hapmap]
rs11678865	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11681915	0.87[CEU][hapmap]
rs11689889	0.85[CEU][hapmap]
rs17026701	0.83[YRI][hapmap];0.86[AFR][1000 genomes]
rs17026728	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280314	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2280315	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2438307	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2577776	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2679723	0.87[CEU][hapmap]
rs2679724	0.87[CEU][hapmap]
rs3770092	0.88[CEU][hapmap]
rs55656327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57178127	0.86[AFR][1000 genomes]
rs58686314	0.82[AFR][1000 genomes]
rs60337023	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6547635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73943777	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs893443	0.87[CEU][hapmap]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:86067000-86099000	Weak transcription	Gastric	stomach
4	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:86072000-86090400	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
7	chr2:86074000-86089800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
9	chr2:86076000-86090400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:86079000-86092000	Weak transcription	Esophagus	oesophagus
11	chr2:86079200-86090400	Strong transcription	A549	lung
12	chr2:86079200-86092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:86079200-86092600	Weak transcription	Colon Smooth Muscle	Colon
14	chr2:86079200-86092800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
16	chr2:86080000-86091600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:86080400-86093000	Weak transcription	HSMMtube	muscle
18	chr2:86080800-86093600	Weak transcription	K562	blood
19	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:86081600-86092600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:86081600-86092800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:86081600-86093000	Weak transcription	Colonic Mucosa	Colon
23	chr2:86081600-86095000	Weak transcription	Pancreas	Pancrea
24	chr2:86081600-86099200	Weak transcription	Left Ventricle	heart
25	chr2:86081600-86100600	Weak transcription	NHDF-Ad	bronchial
26	chr2:86081800-86092000	Weak transcription	Fetal Intestine Small	intestine
27	chr2:86081800-86092000	Weak transcription	Small Intestine	intestine
28	chr2:86081800-86093000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr2:86081800-86093000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr2:86081800-86093000	Weak transcription	Stomach Mucosa	stomach
31	chr2:86082000-86094000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr2:86082000-86099000	Weak transcription	Right Ventricle	heart
33	chr2:86083000-86092000	Strong transcription	Fetal Thymus	thymus
34	chr2:86083200-86090600	Strong transcription	Fetal Muscle Trunk	muscle
35	chr2:86083200-86090800	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr2:86083200-86090800	Strong transcription	Dnd41	blood
37	chr2:86083600-86090800	Strong transcription	Thymus	Thymus
38	chr2:86084200-86090600	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr2:86085000-86090400	Strong transcription	Liver	Liver
40	chr2:86086000-86090600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr2:86086800-86090200	Weak transcription	Spleen	Spleen
42	chr2:86086800-86092000	Weak transcription	Placenta	Placenta
43	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr2:86087200-86090200	Weak transcription	Fetal Stomach	stomach
45	chr2:86087200-86090200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr2:86087200-86091200	Genic enhancers	Primary B cells from peripheral blood	blood
47	chr2:86087400-86089800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr2:86087400-86090200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr2:86087400-86093000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr2:86087400-86096800	Weak transcription	NHEK	skin

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