Variant report

Variant	rs17026728
Chromosome Location	chr2:86102020-86102021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86101410..86103252-chr2:86110793..86113743,3	K562	blood:
2	chr2:86067734..86070701-chr2:86099975..86102346,2	MCF-7	breast:
3	chr2:86087814..86090796-chr2:86100697..86102670,2	K562	blood:
4	chr2:86101610..86104056-chr2:86104461..86106996,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POLR1A-6	chr2:86100851-86104502	l_1878_NR_026984

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11674097	0.87[CEU][hapmap]
rs11678865	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11681915	0.87[CEU][hapmap];0.92[GIH][hapmap]
rs11689889	0.82[CEU][hapmap]
rs17026701	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs17026729	0.86[LWK][hapmap];0.91[MKK][hapmap]
rs2280314	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2280315	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2438307	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2577776	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2679723	0.87[CEU][hapmap];0.92[GIH][hapmap]
rs2679724	0.87[CEU][hapmap];0.92[GIH][hapmap]
rs3770092	0.87[CEU][hapmap]
rs3770093	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55656327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57178127	0.86[AFR][1000 genomes]
rs58686314	0.82[AFR][1000 genomes]
rs60337023	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6547635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73943777	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs893443	0.87[CEU][hapmap]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
3	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
4	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr2:86088400-86105400	Weak transcription	Osteobl	bone
7	chr2:86088600-86111600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:86089000-86102600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:86089800-86106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:86089800-86106000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr2:86090400-86102600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:86090400-86104600	Weak transcription	Liver	Liver
13	chr2:86090600-86109000	Weak transcription	Fetal Stomach	stomach
14	chr2:86090600-86110600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr2:86092200-86105200	Weak transcription	Right Atrium	heart
16	chr2:86093200-86106200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:86093400-86104600	Weak transcription	Ovary	ovary
18	chr2:86093400-86105800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr2:86093400-86106200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr2:86093400-86106800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr2:86093400-86112400	Weak transcription	Colonic Mucosa	Colon
22	chr2:86093600-86111600	Weak transcription	Colon Smooth Muscle	Colon
23	chr2:86093800-86106000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr2:86093800-86113000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:86094000-86103200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr2:86094000-86105400	Weak transcription	NH-A	brain
27	chr2:86094800-86105400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr2:86094800-86106000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr2:86095000-86103400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:86095200-86102600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr2:86095200-86102800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:86095400-86104000	Weak transcription	A549	lung
33	chr2:86096200-86108400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr2:86096800-86107600	Enhancers	Brain Hippocampus Middle	brain
35	chr2:86097000-86104400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr2:86097200-86102600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr2:86097400-86102800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr2:86097600-86102200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr2:86097600-86102600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr2:86097600-86102600	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr2:86097600-86103000	Weak transcription	Placenta	Placenta
42	chr2:86097600-86103200	Weak transcription	Fetal Muscle Leg	muscle
43	chr2:86097600-86103600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr2:86097600-86105800	Weak transcription	Dnd41	blood
45	chr2:86097600-86106000	Weak transcription	Psoas Muscle	Psoas
46	chr2:86097600-86108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr2:86097600-86109200	Weak transcription	NHEK	skin
48	chr2:86097800-86103000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr2:86098600-86103400	Enhancers	Brain Cingulate Gyrus	brain
50	chr2:86098600-86103400	Enhancers	Brain Inferior Temporal Lobe	brain

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